Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5278g00004 ATGGCTCTTCCTTGGGTTTATCTTCTCTTCTTTCTCGCTTGTTCTGGACTCTGTTTCTCGTACGAGCCTCGTAACCATGAAGTGGAGGCTTTGATAAGCATAAGAGCATCTCTGAATGATCCTCATGGGGTATTAAACAACTGGGATGAAAACTCTGTAGACCCTTGTAGTTGGGCTATGATCACGTGCTCTTCTGATTCTCTTGTTATAGGCTTGGGAGCTCCAAGCCAATCTCTTTCTGGAACTCTATCTGCTGCCATAGGAAATCTGACAAATCTTCGACAAGTGCTACTGCAGAACAACAACATATCTGGCCAAATCCCACCGGAGCTGGGTACCCTTCCTAAGCTACAGACTTTAGATCTTTCGAATAATCGATTCTCTGGTGTGATTCCCGGTTCCTTGAGTCACTTGGATGGTCTTAAGTACTTGAGGCTGAACAACAATAGCTTATCTGGGCCCTTTCCTGTGTCACTAGCCAAAATCCCTCAACTTGCTTTCTTAGACTTGTCTTATAACAATCTCAGTGGACCTGTGCCGAAGTTTCCATCTCGATCTCTCAATGTTGTGGGAAACCCATTAATTTGTGGAAGCAGCTCTACTGAAGGTTGCTCTGGATCAACAACTCTCTTGCCTGTTTCATTCTCTCTTCCATCCTCGCAAGGAAAGCACAAGTCCACGACAATAGCGATTGCACTTGGAGTTGGCCTTAGCTTTGCTTGTCTCACACTGCTGACTTTAGGGCTTTTCTTGTATAGAAAGAAAAGACAGCACCGAGCACTTTTGTATATCAGTGATTATCAGGAAGATGGACTTGTTCGCTTGGGGAATCTCAATATTTTCACTTTCAGACAGCTCCAACATGCAACAGATAATTTCAGCTCCAAGAACATACTTGGTGCTGGGGGTTTTGGCAATGTGTATAGGGGTAAGCTTGGAGATGGGACTCTGGTTGCTGTGAAGAGGTTGAAGGACGTCACTGGAAGTGCTGGGGAATCTCAGTTTCGAACTGAATTGGAGATGATCAGTTTGGCGGTTCACCGTAATTTACTTCGCTTAATAGGATACTGCGCTACTCCTAATGAGAAGCTTCTGGTTTATCCTTACATGTCTAATGGAAGTGTGGCATCCAGACTAAAAGGCAAACCCGCTCTAGATTGGAACACGAGGAAGAAGATAGCTATTGGAGCTGCCAGAGGTCTTCTGTATCTACATGAGCAGTGTGATCCAAAGATAATACATAGAGATGTTAAGGCTGCTAATGTGCTTCTGGATGAGTACTATGAAGCCATTGTTGGTGATTTTGGCCTTGCTAAGCTCCTTGATCACGCTGACTCTCATGTCACTACTGCTGTCCGTGGCACTGTCGGGCACATTGCGCCAGAGTACCTCTCCACTGGCCAATCATCTGAAAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTGGAGCTCATAACTGGAATGACGGCTCTTGAGTTTGGAAAAACGGTGAATCAGAAAGGTGCAATGCTAGAGTGGGTGAAGAAAATACAGCAAGACAAGAAGGTGGAATTGTTGGTGGACAAAGAGTTAGGAAGAAACTATGATAGGATAGAGGTGGGGGAGATGTTGCAAGTAGCTTTACTTTGCACTCAGAATCTACCAATTCACCGCCCCAAAATGTCAGAAGTGGTCAGAATGCTTGAAGGCGATGGCCTTGCAGACAAGTGGGCAGCTTCACAGAATCATAATAATCTCAACATGAACACCTTTCATAGCCACAGTAACAATAGTTCATCTTCTCGACCAAGCACCACCCTTGCTTCAAATCATGATGATGATGATAATGATCGTCCCAACATGGTTGGCATGGGACTGGATGGTGATGATGATGATGAACACTCTTTGGATTCTTATGCCATGGAACTCTCTGGTCCTAGGTAA 1926 0.446 MALPWVYLLFFLACSGLCFSYEPRNHEVEALISIRASLNDPHGVLNNWDENSVDPCSWAMITCSSDSLVIGLGAPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGQIPPELGTLPKLQTLDLSNNRFSGVIPGSLSHLDGLKYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPVPKFPSRSLNVVGNPLICGSSSTEGCSGSTTLLPVSFSLPSSQGKHKSTTIAIALGVGLSFACLTLLTLGLFLYRKKRQHRALLYISDYQEDGLVRLGNLNIFTFRQLQHATDNFSSKNILGAGGFGNVYRGKLGDGTLVAVKRLKDVTGSAGESQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLKGKPALDWNTRKKIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDEYYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVKKIQQDKKVELLVDKELGRNYDRIEVGEMLQVALLCTQNLPIHRPKMSEVVRMLEGDGLADKWAASQNHNNLNMNTFHSHSNNSSSSRPSTTLASNHDDDDNDRPNMVGMGLDGDDDDEHSLDSYAMELSGPR 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5278g00004 641 FunFam Somatic embryogenesis receptor-like kinase 1 370 582 - -
Pral5278g00004 641 Gene3D Transferase(Phosphotransferase) domain 1 370 582 - -
Pral5278g00004 641 FunFam Somatic embryogenesis receptor kinase 1 263 369 - -
Pral5278g00004 641 Pfam Protein kinase domain 294 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5278g00004 641 SMART LRR_typ_2 138 169 IPR003591 -
Pral5278g00004 641 SMART LRR_typ_2 114 137 IPR003591 -
Pral5278g00004 641 SMART LRR_typ_2 90 112 IPR003591 -
Pral5278g00004 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 573 - -
Pral5278g00004 641 SUPERFAMILY L domain-like 25 197 - -
Pral5278g00004 641 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Pral5278g00004 641 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
Pral5278g00004 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Pral5278g00004 641 PRINTS Leucine-rich repeat signature 117 130 - -
Pral5278g00004 641 PRINTS Leucine-rich repeat signature 162 175 - -
Pral5278g00004 641 MobiDBLite consensus disorder prediction 602 623 - -
Pral5278g00004 641 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Pral5278g00004 641 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
Pral5278g00004 641 SMART serkin_6 293 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5278g00004 641 ProSiteProfiles Protein kinase domain profile. 293 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5278g00004 641 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Pral5278g00004 641 SUPERFAMILY Protein kinase-like (PK-like) 276 563 IPR011009 -
Pral5278g00004 641 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Pral5278g00004 641 MobiDBLite consensus disorder prediction 579 601 - -
Pral5278g00004 641 MobiDBLite consensus disorder prediction 579 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5278g00004 Pral-Chr5278 29423 34791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5278g00004 8 508 Receptor kinase-like Gene Family AT2G23950 77.445 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pral5278g00004 Pkinase 2.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5278g00004 - - jre:108989515 992.645