Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5275g00001 ATGGGATTACAGAACCACCTCCATGACGTCTCTTCCGATTCCATTCCCCTCCTTCTCCTCCTCCACGTCGCCGCCGGCTTCAATTACCTCCGCTCCTTCCTTCTCGGTTTCCTTCACTCTCTCGGCCTCTCCAGATTCCACCCCCACACACCCGCCATCGTTGACGATGCCCTCCTCGCCGCAGTCGGATCCGGATTCGCCCGCCTCGCGATACTTTCGGACCAGCTCCATGCCAACTATGATCTCACCGACGACGACAGCACGATTGCCGCCCCCTCCATGTGTGTGGTGTGCCGGAGCAAGTATAGGGAGGGTGACCAGGTAAGGAGGCTTCCCTGCCACCACGTCTTCCATAGACGATGCTTTGATGCTTGGCTTCATCAGCTCAAGTTTAATTGTCCTCTCTGTCGTTCGGCTCTCGTCTCCGACGAGCGCGTGGCCCTCGCAGAGCGCCGCGTTGGGAGCGAGGCCTTAGCATGGTTCTCTCTGCAGTGA 495 0.5899 MGLQNHLHDVSSDSIPLLLLLHVAAGFNYLRSFLLGFLHSLGLSRFHPHTPAIVDDALLAAVGSGFARLAILSDQLHANYDLTDDDSTIAAPSMCVVCRSKYREGDQVRRLPCHHVFHRRCFDAWLHQLKFNCPLCRSALVSDERVALAERRVGSEALAWFSLQ 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5275g00001 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 69 149 - -
Pral5275g00001 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 152 IPR013083 -
Pral5275g00001 164 SUPERFAMILY RING/U-box 94 142 - -
Pral5275g00001 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Pral5275g00001 164 Pfam Ring finger domain 94 137 IPR001841 -
Pral5275g00001 164 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5275g00001 Pral-Chr5275 3442 4325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5275g00001 1 163 C3H Transcription Factor Family AT1G15100 48.171 1.36e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5275g00001 K16282 - cave:132161769 185.267