Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5274g00002 ATGATCGGACCCAATTTCATGGATGAGCTAGACTGCGGCAGCTTCTTCGACCACATTGATGACCTCCTCGATTTCCCCGCCGAAGACGTCGACGCCTCCGCTTTACCCACTGGCGCCGGGAATTGCAGCGCCTTCCCCAGCATCTGGACCGGCGAGTCCGACTCCCTGCCTGGCTCCGACTCTGTTTTCTCCGGCAACAACACCTCCGACCTCTCCGCCGAGCTCTCCGTTCCGTATGAAGACATTGTCCAGTTGGAATGGCTTTCGAACTTTGTGGAGGACTCGTTCACTGGTGGAAGCCTCACCATGAAGCAAGTGGAGCAATCTTGCACCACCAATAACGACTCAGGACACCACCAATTCCAGACTTCAAGCCCCGTCTCTGTCCTCGAGAGCAGCAGCTCCTGTTCAGGGGAGAAGCCGGTGGCGGCGCCACCTCGAAGCCCGCCGGAAATGGTCGTCCCCGTGCCTTGTGGCGGGCGTGCTCGCAGCAAGCGTCCACGCCCCGCCACATTCAAGCCCCGTCCCGCGATGCAGCTCATTTCCCCTGCATCCTCCGTCGGCGAAAACACACAGCGAAATTCAGATTGTGAGAATTTCGTGGAGTCTCATCCGGTGATCAAGATACCTAAGCAATCTTCAGGGGAGCACAAGAAGAAGAAGAAGATCAAATTTACTTGTCCATTAGGTCCTGCTGATGTGAATCAGCAGAATGGTTCATCACAAGCAGTGAGGAAATGTATGCATTGTGAGATAACAAAGACCCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGGGTTCGATACAAGTCCGGCCGGCTATTCCCAGAATACAGACCGGCAGCTAGTCCGACATTTTGCCCATCCTTGCACTCGAATTCCCATAAGAAGGTGCTTGAAATGAGAAGCAAACCACCACATACTGATGCTTCACCAGAGCTCATTCCAAACACTGACAGCAGCCTTTCCCTGGAATACATGTGA 1005 0.5423 MIGPNFMDELDCGSFFDHIDDLLDFPAEDVDASALPTGAGNCSAFPSIWTGESDSLPGSDSVFSGNNTSDLSAELSVPYEDIVQLEWLSNFVEDSFTGGSLTMKQVEQSCTTNNDSGHHQFQTSSPVSVLESSSSCSGEKPVAAPPRSPPEMVVPVPCGGRARSKRPRPATFKPRPAMQLISPASSVGENTQRNSDCENFVESHPVIKIPKQSSGEHKKKKKIKFTCPLGPADVNQQNGSSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRSKPPHTDASPELIPNTDSSLSLEYM 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5274g00002 334 PIRSF Txn_fac_GATA_plant 2 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral5274g00002 334 MobiDBLite consensus disorder prediction 320 334 - -
Pral5274g00002 334 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
Pral5274g00002 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 304 - -
Pral5274g00002 334 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
Pral5274g00002 334 FunFam GATA transcription factor 236 321 - -
Pral5274g00002 334 Gene3D - 241 291 IPR013088 GO:0006355|GO:0008270
Pral5274g00002 334 MobiDBLite consensus disorder prediction 109 193 - -
Pral5274g00002 334 MobiDBLite consensus disorder prediction 109 139 - -
Pral5274g00002 334 PANTHER GATA TRANSCRIPTION FACTOR 16 318 - -
Pral5274g00002 334 MobiDBLite consensus disorder prediction 307 334 - -
Pral5274g00002 334 CDD ZnF_GATA 246 293 IPR000679 GO:0006355|GO:0043565
Pral5274g00002 334 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Pral5274g00002 334 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5274g00002 Pral-Chr5274 21362 23583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5274g00002 19 316 C2C2-Gata Transcription Factor Family AT4G32890 37.793 4.96e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5274g00002 GATA 5.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5274g00002 - - gmx:100815693 474.552