Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5273g00004 ATGGAGTCTTCCAACGTCAATGGCCGTAATAATGTCGCCTTGGAGCTTTGCAGTGGCGGTGCCGCTGTCTGTGATGGTGATCCTCTGAACTGGGGCCTGGCGGCGGAGGCTCTGAAGGGGAGCCATTTGGACGAGGTGAAGCGGATGGTGGAGGAGTACCGGAAGCCGGTGGTGCGAATCGCCGGCAAGTCACTGAGGATATCGCAGGTGGCCGCGATCGCTAACCATGACGCCGGCGTGGCGGTGGAGCTGTCGGAGGAGGCTCGCGCAGGCGTGAAGGCCAGCAGCGACTGGGTCATGGAAAGCATGAACAAAGGCACTGACAGCTATGGAGTCACCACCGGCTTCGGTGCCACCTCACACAGGAGAACCAAGCAGGGTGGGGCCCTCCAGAACGAGCTCATCAGATTCTTGAATGCTGGCATCTTCGGCAATGGCACGGAATCGTCTCACATGTTGCCTCACACAGCCACAAGAGCCGCTATGCTGGTCAGAATCAACACTCTTCTTCAAGGATACTCCGGCATCAGATTTGAGATCTTGGAAGCCATGACCAAGTTCCTTAACCACAACATAACTCCATGCCTTCCTCTCAGGGGCACCATCACTGCTTCAGGGGACCTCGTACCTCTGTCTTACGTTGCCGGCCTCTTGATCGGCCGACCCAACTCCAAATCCATAGGTCCTGACGGTAAAGTCCTCTCTCCTAAAGAAGCCTTTCAATTCGCAGGAATCAGTGGAGGTTTCTTTGAACTGCAGCCCAAAGAGGGCTTGGCTCTTGTTAATGGTACTGCCGTAGGATCTGCTTTAGCCTCCATGGTTCTTTTCGAGGCAAACATTCTGGGTGTCCTGTCGGAAGTCTTGTCTGCAATTTTCGCCGAGGTTATGCAGGGCAAGCCAGAGTTTACTGACCACTTGACACATAAATTGAAACACCATCCTGGCCAAATTGAGGCCGCTGCTATAATGGAACACATTTTAGATGGAAGCTCTTATGTTAAGGCAGCTCAGCAGCTCCATGAGATTGATCCTCTTCAGAAGCCTAAACAAGACAGGTATGCTCTGAGAACTTCTCCTCAGTGGCTTGGACCGCAGATTGAAGTGATCAGACAAGCGACAAAGATGATCGAGAGAGAGATCAACTCTGTGAATGACAATCCATTGATTGATGTTTCAAGGAGCAAGGCACTTCATGGAGGAAACTTCCAGGGTACCCCAATTGGCGTTTCAATGGACAACACTCGCCTGGCCCTTGCTTCCATTGGAAAGCTCATGTTTGCCCAATTCTCTGAGCTTGTCAATGACTTTTACAACAATGGGTTGCCTTCAAACCTCTCTGCTAGCCGACACCCGAGCTTGGATTATGGCTTCAAGGGAGCTGAAATCGCCATGGCTTCATACTGTTCAGAGCTTCAATTCCTTGCCAATCCTGTCACAAACCATGTTCAGAGCGCAGAGCAACACAACCAAGACGTGAACTCTTTAGGGCTAATTTCCTCAAGAAAAACAGCTGAAGCTGTGGACATACTGAAGCTCATGTCCTCCACCTTCTTAATTGCACTATGCCAAGCCATAGATCTGAGGCATTTGGAAGAGAACTTAAAGAGCACTGTGAAGAACACTGTGAACCAAGCGGCCAAGAAAGTCCTAACAATGGGTGTCAATGGAGAATTACTCCCTTCAAGATTCTGCGAAAAGGATTTACTCACAGTGGTGGACCGTGAGCATGTGTTTGCTTACATTGATGATCCTTGCAGCGCAACATACCCATTAATGCAGAAACTGAGACAAGTTCTGGTTGATCATGCACTGCAAAATGGTGACAGAGAAAAGGACTCAAGCACCTCCATTTTCTCGAAGATTGCAGCTTTTGAGGAAGAACTCAGGATCCATTTGCCCGGAGAAGTAGAAAATGCAAGAATTGAGGTCGAGAATGGAAAATGTGCCGTCCCTAACAGGATCAAAGAATGCAGGTCTTATCCACTGTACAGATTTGTGAGAGAAGAACTTGGTACTGGTTTGCTAACAGGTGAGAAAGTGAGGTCACCTGGTGAAGAATTTGACACGGTCTTCACCGCGATGTGTGCAGGAAAGTTGATTGATCCTTTATTGGAGTGCCTCAAGGAGTGGAATGGGGCTCCTCTGCCAATATGTTAG 2157 0.4961 MESSNVNGRNNVALELCSGGAAVCDGDPLNWGLAAEALKGSHLDEVKRMVEEYRKPVVRIAGKSLRISQVAAIANHDAGVAVELSEEARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESSHMLPHTATRAAMLVRINTLLQGYSGIRFEILEAMTKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGKVLSPKEAFQFAGISGGFFELQPKEGLALVNGTAVGSALASMVLFEANILGVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQQLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRQATKMIEREINSVNDNPLIDVSRSKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRHPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLIALCQAIDLRHLEENLKSTVKNTVNQAAKKVLTMGVNGELLPSRFCEKDLLTVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALQNGDREKDSSTSIFSKIAAFEEELRIHLPGEVENARIEVENGKCAVPNRIKECRSYPLYRFVREELGTGLLTGEKVRSPGEEFDTVFTAMCAGKLIDPLLECLKEWNGAPLPIC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5273g00004 718 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Pral5273g00004 718 NCBIfam phenylalanine ammonia-lyase 27 708 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pral5273g00004 718 Gene3D Fumarase/aspartase (Central domain) 265 713 - -
Pral5273g00004 718 CDD PAL-HAL 63 528 IPR001106 -
Pral5273g00004 718 PANTHER HISTIDINE AMMONIA-LYASE 21 718 IPR001106 -
Pral5273g00004 718 SUPERFAMILY L-aspartase-like 27 718 IPR008948 GO:0003824
Pral5273g00004 718 Gene3D - 531 652 IPR023144 -
Pral5273g00004 718 Gene3D - 18 264 IPR024083 -
Pral5273g00004 718 FunFam Phenylalanine ammonia-lyase 19 264 - -
Pral5273g00004 718 FunFam Phenylalanine ammonia-lyase 531 652 - -
Pral5273g00004 718 FunFam Phenylalanine ammonia-lyase 265 567 - -
Pral5273g00004 718 Pfam Aromatic amino acid lyase 65 537 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5273g00004 Pral-Chr5273 22637 27232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5273g00004 16 718 Monolignol Biosynthesis Gene Families AT3G53260 81.408 0.0 1217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5273g00004 K10775 - rcu:8273543 1234.94