Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5270g00011 ATGGCATCTTCTGCTTCTTCTTCCCAAGTTCCTTGTGGCAAACATGATGTTTTTATCAGCTTTAGAGGACCAGACATCAGATCTGATTTTCTCAGCCATTTGAAAAGGGCATTGCGTCAAAAGAACGTAGATGTCTATGTTGATGATAGGCTCGAGAGAGGAGAAGAAATATGGTCAGTACTTGTGAATGCAATAGAAGGATCCATGATTGCTTTGGTTATATTCTCCGACAATTATGCTTCTTCAGAGTGGTGCTTGGAAGAGCTAGTGAAAATCGTGGAATGTAAAAAAGCTAATCAACAGATTGTGATACCAATATTTTACCGTGTGGATCCATCACATGTCAGGCATCAAACACACACTTATGCAGAAGCATTTACTCATCATGAGCAAAGGTTCCCGGACAACATGGACAATTTGGAAAATTGGAGATCTGTTTTGAAAGAAACTGCTCACTTATCCGGTTATCATTCATCAAATTTTCAAGATGAATCTGAACTCATCAATGCAATAGTTGAAGATGTCTTTAAAAAATTAGAAGTTAACACTCAAATTGTGCCAAGATCTCAGCTCATTGGATTTCATCAAAATTTCACTAATGTTGAATCATTAATGAAAATTGAGTCACCAGAAGTTCGAGTTCTCGGAATTTGGGGCCCAGGAGGGATAGGCAAAACAACCCTTGCTTCTGCTATATTTGACAACTTCTTGTCTAAATTTGAAAGTCACTGTTTCTTAGAAAATGTGAGAGAAGAATCAACAAAGATTGGGTTAAGCTCTTTGCGTCAAAAACTTCTTTCCAAGCTATTAGATCAAAAAGATTACATAAATATGAATCACACAATGAGAAGGTTGAAACAAAAAAAAGTGCTAATTGTAATTGATGATGTAGACAATCCAAAGCAACTAAAAGATTTGGCTGGACAACAACTTCACTTGGGACAGGGAAGCAGAGTCATTGTAACAAGTAGAGACAAGCATGTTCTTAGAAGTGGAGGGATTCATGAAAAATATATACATGAAGTCAGAGAATTGAGTAGAAAAGAATCACTTGAACTTTTCAGTATGCATGCCTTCAATCAAAATCATCCTATTCAAGGATATGAAGAGCTATCAAATTTGACAGCTGCCTTGGTTGGAGGCATTCCTTTAGCTTTAGAAGTTCTGGGTTCCCATTTTCATTCTAGGGATGAAGCATATTGGAAAAGTGAGCTTAGCAAACTCCAAAAGTATCCCCATCAGGATATTCAAAATATATTGAAGGTGAAGTTATTCCTCAACTAG 1284 0.3684 MASSASSSQVPCGKHDVFISFRGPDIRSDFLSHLKRALRQKNVDVYVDDRLERGEEIWSVLVNAIEGSMIALVIFSDNYASSEWCLEELVKIVECKKANQQIVIPIFYRVDPSHVRHQTHTYAEAFTHHEQRFPDNMDNLENWRSVLKETAHLSGYHSSNFQDESELINAIVEDVFKKLEVNTQIVPRSQLIGFHQNFTNVESLMKIESPEVRVLGIWGPGGIGKTTLASAIFDNFLSKFESHCFLENVREESTKIGLSSLRQKLLSKLLDQKDYINMNHTMRRLKQKKVLIVIDDVDNPKQLKDLAGQQLHLGQGSRVIVTSRDKHVLRSGGIHEKYIHEVRELSRKESLELFSMHAFNQNHPIQGYEELSNLTAALVGGIPLALEVLGSHFHSRDEAYWKSELSKLQKYPHQDIQNILKVKLFLN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5270g00011 427 Gene3D - 12 177 IPR035897 -
Pral5270g00011 427 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Pral5270g00011 427 Gene3D - 344 424 IPR042197 -
Pral5270g00011 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 422 IPR027417 -
Pral5270g00011 427 PRINTS Disease resistance protein signature 214 229 - -
Pral5270g00011 427 PRINTS Disease resistance protein signature 379 393 - -
Pral5270g00011 427 PRINTS Disease resistance protein signature 284 298 - -
Pral5270g00011 427 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 181 - -
Pral5270g00011 427 Pfam TIR domain 14 184 IPR000157 GO:0007165
Pral5270g00011 427 Gene3D - 178 339 IPR027417 -
Pral5270g00011 427 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 422 IPR044974 GO:0006952
Pral5270g00011 427 Pfam NB-ARC domain 202 414 IPR002182 GO:0043531
Pral5270g00011 427 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Pral5270g00011 427 SMART till_3 14 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5270g00011 Pral-Chr5270 249450 250986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5270g00011 15 391 WRKY Transcription Factor Family AT4G12020 28.646 4.38e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5270g00011 - - pcin:129287860 560.066