Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5270g00008 ATGGCTGCTTTTGCTTCTGCTTCTTCTTCCCAAGTTTCCTCTAGAAAGTATGAAGTCTTCATCAGCTTTAGAGGAACAGACGTCAGATCTAGTTTCCTTTGCCATTTGAAAAACGAGTTGCTTCGAAAGAAGATAGATGTCTACGTGGATGACAGGCTCGAAAGAGGAGAAGAAATATCATTAGCACTTGTAGAAGCAATAGAAGGATCCATGATAGCGTTGGTTATATTCTCAAAAAATTATGCTTCTTCAAAGTGGTGCTTGGAAGAGCTTGTCAAAATCATAGAATGTAAGGAAGCTGGTCAGCAGATTGTGATACCAATTTTCTACCACGTAGATCCATCAGATGTCAGGCACCAAAGAGGCACTTATGAGGAGGCATTCACTTGTCATGAACAGAAGCTCAAGGATAAAGTGCAAAATTTGCAAATTTGGAGATCTGTTTTGAAAAAAACTGCAAACTTAGCTGGTTTTCATTCATCAAATTTTCAAGATGAATCTAAACTCATCAATGCAATAGTTGAAGATGTCCTAAAAAATTTGGAAGATCACAGTCCAACTGTGTCGAGATCTCAACTCATTGGATTTCATCAAAATTTGACTAGTGTTGAATCATTAATGGAAAATGAGTCGCCAGAGGTTCGAGCTCTTGGAATCTGGGGCCTAGGAGGGATAGGCAAAACAACCCTTGCTCGTGCTATATTTGAAAAATTCTTGTCTAAATTTGAAGAAAAAAAAGTGTTAATTGTACTTGATGATGTGGACAATCCAAAGCAGCTAAAAGACCTGGCTGGACAACAACTTTACTTGGGACAGGGAAGCAGAGTCATTGCAACAAGTAGAGACAAGCATGTTCTTAGGAGTGGAGGGATTCAGGAAAAATATATACATGAAGTCAGTGAATTGAGTTTAGAAGAATCACTTGAACTTTTCAGTATACATGCCTTCAATCAAAATTATCCCATTAAGGGATATGAAGAGCTATCAAATTCAACAGTTGCCTTGGCTAGAGGCATTCCTTTAGCTTTAGAAGTTCTGGGTTCCCATTTTCATTCTAGGGATGAAGCATATTGGAAAAGTGAGCTTAGCAAACTCCAAAAGTATCCCCATCAGGATATTCAAAATATATTGAAGGTGAGTTATGATGGGTTAGATAATATGGACAAGCAAATATTATTAGACATTGCATTCTTTTTCGTGGGAGAACAGAAAGGTGAAGTTATTCCTCCACTAGAGGCTTGTGGTTTCAGAGCAGTTAGTGGAATACAAAATCTTATAGATAAAGCTCTCGTGAAGTTAGGTGAGCTTGACCATATTATAATGCATGATTTGATACGAGAAATGGCTGAGCAAATAGTTCGTGAGGAATGTGTGAACCATCCTGAATTACGTAGTCGATTAAATGATGCAGATGAAATATGTGATGTGTTAAAAGATAACAAGTCTTTGCCATTGGACTTTTGTCCTGAAAACCTTGTTGAACTACGAATGAATGGAAGCAATGTTACAAAGCTTTGGGATGGAGTGAAGGATCTTGTGAATCTAAGGACAATAAATTTGCGTCTATGCCATAAATTGATGGAATTGCCTGATTTTTCTATGGCATATAAGCTTGAAAATATAGATCTCTCTGATTGTTCAAGTTTGAGGAGTGTTCATCCATCCATTTTATCTCTCCACACTCTTGTTAAATTGGATGTAGATTATTGCCATGAATTAGAGAGTCTTGAAAGTGAGACTCATTTAGAATCTCTCTCCGATCTCCAAGCTAGCGGATGTGGCCTCAAGAAATTTTGTTTGTCATCAAATAAATTGGAAAGCATATATCTTCGAGAAACTAGACTTGAAATATTGGATTTGCCAATCGGACGTTTCACAAAGCTTAGAAGTCTTTTAATTCTTCACGGTGAAAGATTGAGGAGTCTTCCAATAAAGGAGCTGTGTTGCTTGACAAATCTTAAGGAGTTTCAGGTTCGTGATTTCAAGCAGGAAATTCACACAGAGGAGCTGCGCTCCCTTTTTAATGCTTGGCATAATTTGGAAAAACTATGTTTGGATGGATGGAGTTACTTGTCAGAAATCCCTGACGATATCAAGTACTTAACAAGGTTACATTATTTGTCATTGGAACATAGTGGTGTAGAGACATTGCCACCTTGCGTCAGCCATCTTTCAAGCTTGACAAGCATTTACCTATTTGGCTGCGAAAGGCTTAAGTCGATACTTGGACTTCCTCCCATGCTTAAAGCATTAGATGCCAATGATTGCACTTTATTGGAGACTGTATCCTCTGACTCTCTAGTTTGCAATCCGTGTTGGTTTCAATTCAAAAATTGTGTAAAGTTGGATGAGTGTTCGCTTGGCTCTATTGAGGAATTAACTCATTTCTCACTGACTTCAGCTTGTAAGGATGATATTAGGGGTGCTACAGCTTGTTACCCAGGAAACAGAGTTCCAAAGTGGATGAAATATAAACAAATGACAGAGGCTTCCAATACTATCCAATTCACTTGCAATCTTGAACGAGCAATTGGCATATTGTTTTGTTGTGTTGCTCCTCATCGTCATCTCAGATCACCGGGACAGGACCCTCTCGTCACCTGTTATATCACTTGCGATGATATTGTGACCGAGTCCTTGCCTTGTAATAAACCTCTTTATGAATTGGATTCAGACCATGTTTTTATATGGCCCAGGAAGGGGTTCCCATTTGGTACTGGAACAGGTGATGATGTTAAGATTTCATGTGAATTCTTTCTGGAATGGCGGGATCATGGAAAGATGTATCGCAACCACAAAGTCCCTATTGAAGCATGTGGAGTACACGTAATATATGACTCGGAGTCGGAGCCTGGGTCGGGTCAAAAAAGAAAGAGGGTTGCTGATATAGTTGTTGAAGATGGAGTCCCTCCCACAAAGCGGCTCAACAATTCTTGGATCTCTCAACCTACTCCCCTGGGACTGGCATTGCAGTTGGGGTTGGCTACTACTAAATCCAACAAATCTCATGATAACTTCATCTGTCACCCACTGCAACTCAAATTTATGCGCAAGAAGAAACAAGAGGACCCTTTGCAGCTCAAGTTAAATATAAATTCTGACTGCTCCAGGGATGACGACATCAGTTCCAGAGCAGAATTTGGTGCTTCCTACCTTAAGCTTGCAGGAGGGCTTTTTGCTGATCAGTGA 3189 0.3945 MAAFASASSSQVSSRKYEVFISFRGTDVRSSFLCHLKNELLRKKIDVYVDDRLERGEEISLALVEAIEGSMIALVIFSKNYASSKWCLEELVKIIECKEAGQQIVIPIFYHVDPSDVRHQRGTYEEAFTCHEQKLKDKVQNLQIWRSVLKKTANLAGFHSSNFQDESKLINAIVEDVLKNLEDHSPTVSRSQLIGFHQNLTSVESLMENESPEVRALGIWGLGGIGKTTLARAIFEKFLSKFEEKKVLIVLDDVDNPKQLKDLAGQQLYLGQGSRVIATSRDKHVLRSGGIQEKYIHEVSELSLEESLELFSIHAFNQNYPIKGYEELSNSTVALARGIPLALEVLGSHFHSRDEAYWKSELSKLQKYPHQDIQNILKVSYDGLDNMDKQILLDIAFFFVGEQKGEVIPPLEACGFRAVSGIQNLIDKALVKLGELDHIIMHDLIREMAEQIVREECVNHPELRSRLNDADEICDVLKDNKSLPLDFCPENLVELRMNGSNVTKLWDGVKDLVNLRTINLRLCHKLMELPDFSMAYKLENIDLSDCSSLRSVHPSILSLHTLVKLDVDYCHELESLESETHLESLSDLQASGCGLKKFCLSSNKLESIYLRETRLEILDLPIGRFTKLRSLLILHGERLRSLPIKELCCLTNLKEFQVRDFKQEIHTEELRSLFNAWHNLEKLCLDGWSYLSEIPDDIKYLTRLHYLSLEHSGVETLPPCVSHLSSLTSIYLFGCERLKSILGLPPMLKALDANDCTLLETVSSDSLVCNPCWFQFKNCVKLDECSLGSIEELTHFSLTSACKDDIRGATACYPGNRVPKWMKYKQMTEASNTIQFTCNLERAIGILFCCVAPHRHLRSPGQDPLVTCYITCDDIVTESLPCNKPLYELDSDHVFIWPRKGFPFGTGTGDDVKISCEFFLEWRDHGKMYRNHKVPIEACGVHVIYDSESEPGSGQKRKRVADIVVEDGVPPTKRLNNSWISQPTPLGLALQLGLATTKSNKSHDNFICHPLQLKFMRKKKQEDPLQLKLNINSDCSRDDDISSRAEFGASYLKLAGGLFADQ 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5270g00008 1062 Gene3D - 240 297 IPR027417 -
Pral5270g00008 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Pral5270g00008 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 303 385 - -
Pral5270g00008 1062 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Pral5270g00008 1062 Gene3D - 301 385 IPR042197 -
Pral5270g00008 1062 SUPERFAMILY L domain-like 441 792 - -
Pral5270g00008 1062 Pfam Leucine Rich Repeat 491 510 IPR011713 -
Pral5270g00008 1062 Gene3D - 184 239 IPR027417 -
Pral5270g00008 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 395 IPR027417 -
Pral5270g00008 1062 SMART till_3 16 155 IPR000157 GO:0007165
Pral5270g00008 1062 PRINTS Disease resistance protein signature 533 549 - -
Pral5270g00008 1062 PRINTS Disease resistance protein signature 216 231 - -
Pral5270g00008 1062 Pfam NB-ARC domain 242 385 IPR002182 GO:0043531
Pral5270g00008 1062 Gene3D Ribonuclease Inhibitor 428 598 IPR032675 -
Pral5270g00008 1062 Gene3D Ribonuclease Inhibitor 599 804 IPR032675 -
Pral5270g00008 1062 Pfam TIR domain 16 191 IPR000157 GO:0007165
Pral5270g00008 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Pral5270g00008 1062 Gene3D - 11 183 IPR035897 -
Pral5270g00008 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 244 595 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5270g00008 Pral-Chr5270 203553 208388 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5270g00008 13 764 WRKY Transcription Factor Family AT4G12020 26.037 8.00e-51 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5270g00008 - - pcin:129311144 649.818