Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral526g00012 ATGATATACTGTGATCACTGTCGGAAACGTGTGCACGGAATGCGACCGGATGATTCTTCATTATGTTGTGAAGCATGTGGGAAGGTTTTGGAAGACATGAATTTTTCTCAAGAGCCCACTTTCATTAAAGATGCATCTGGGCAGAGTAAACTATCAGGTAATTATGTGAGAACAATCCAAAGCGGGTATTCGGCTTCCCGTCAAAGAACATTAGACAGAGCCTTTGATGACATAAGATACCTAAGCCAAAACCTTGGAGTGGAAGATGTCAGGTTGTCCACACAAGCATTGGCCTTTTATAAAATAGCAATTGAACGGAATTTCACAAAGGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGGGCAGAAGATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTTCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTGAGGCTTGAAGAGCACCCAATTGTTCAAAAACCCGTTGATCCTAGTCTTTTTATTTTTAAATATACAAGGAATTTATTAAATCAAAGGAATATCATCGTCACTGAAACTGCACTGAGCATTATTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGTTTATGTGGTGCGGCATTGTATATAGCTGCGCTTGCACATGGTTTTAAATACTCAAAGTCTGACATTCTAAGAATTGTCCATGTGTGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAACCTCTGCAAGCTTGACCGTTGGGGAATTGAAGATGATGGCAAAAGAACGTGAAAAAATTCCTATGGAAAAACCAAATTGTGGATCAGAGGAACATGTCTCAAAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACACTGGGCCCATGGATTATGTGAAAGATGTTATGAGGATTTTGTTAAACTCTCTGGTGGACTTGATGGCGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACCTTGTGAGGAAAGTGGCAACCAATCAAGTGATTTGGCAAAAGCATCAAATGGTATGTGTGCAGGCAGGAAAGAAGAGCTGTATGCTCCTGGGCCAGAAAGTGTTGCCGATGTTGAGCAAATGGCTACTAACGATGGCAGGAATGATGAATCACATGGAGAAGATATGAGTGCTAAAGCTCTTAGTGAATCAGAAAGTCTCTCAGATATTGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAAGAGGAGAAGCATTACAAGACGCTTATATGGAGTGAAATGAATAGGGAGTATCTGGAGGAGCAAGCAGCCAAGGAAGCAGCAGCAGCTGCTGCTAAGGCAACTTTCGAGGCAAATTTTCAAAACTGTTCCGAGGATATGCTAGCAGCGAAAGAGCTTGCTGAATCTGCTGCTGCAGCTGTGGCCAAATCCAGAAAGGAAAAAAAGCAGAGACGTGCCCAGGAGGCAAAAAACTCAGGTCCTGCTCAATCTGCTGCAGAGGCTACTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGATAATTTATTTGACGATATTGAGGCCTCGGAGAACAAGAAAGTACGGTTTGAGCTGCACTCTGGTAAAGGTAGTAAACTAGAGCCTGAGCTAGAGGACAAAGACAAAGGTGATGATATGGGATCTGTTGATAAATTTGAGTATGGAGGTTATATGGGTAAGGAAAATAATTTGCAGGAAGAAAAACTGGCGGAGTATGACTGTGGAGATGATGATTATAGCTATGATGATGACGACTAA 1848 0.4205 MIYCDHCRKRVHGMRPDDSSLCCEACGKVLEDMNFSQEPTFIKDASGQSKLSGNYVRTIQSGYSASRQRTLDRAFDDIRYLSQNLGVEDVRLSTQALAFYKIAIERNFTKGRKSEQVQAACLYIAFRAEDKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTRNLLNQRNIIVTETALSIIASMKRDWMQTGRKPSGLCGAALYIAALAHGFKYSKSDILRIVHVCEATLTKRLVEFENTTSASLTVGELKMMAKEREKIPMEKPNCGSEEHVSKDLLCEHKDSGVPHWAHGLCERCYEDFVKLSGGLDGGLDPPAFQRAERDRMTKSPCEESGNQSSDLAKASNGMCAGRKEELYAPGPESVADVEQMATNDGRNDESHGEDMSAKALSESESLSDIDDLEVEGYLHNEEEKHYKTLIWSEMNREYLEEQAAKEAAAAAAKATFEANFQNCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDIEASENKKVRFELHSGKGSKLEPELEDKDKGDDMGSVDKFEYGGYMGKENNLQEEKLAEYDCGDDDYSYDDDD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral526g00012 615 Pfam Brf1-like TBP-binding domain 416 541 IPR011665 -
Pral526g00012 615 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Pral526g00012 615 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Pral526g00012 615 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Pral526g00012 615 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Pral526g00012 615 MobiDBLite consensus disorder prediction 341 363 - -
Pral526g00012 615 Gene3D Single helix bin 408 458 - -
Pral526g00012 615 MobiDBLite consensus disorder prediction 553 615 - -
Pral526g00012 615 MobiDBLite consensus disorder prediction 392 413 - -
Pral526g00012 615 SMART cyclin_7 76 158 IPR013763 -
Pral526g00012 615 SMART cyclin_7 176 259 IPR013763 -
Pral526g00012 615 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Pral526g00012 615 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 531 IPR000812 GO:0006352|GO:0070897
Pral526g00012 615 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Pral526g00012 615 FunFam Transcription factor IIIB subunit 173 262 - -
Pral526g00012 615 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Pral526g00012 615 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Pral526g00012 615 MobiDBLite consensus disorder prediction 392 407 - -
Pral526g00012 615 Coils Coil 488 508 - -
Pral526g00012 615 Gene3D - 62 165 - -
Pral526g00012 615 MobiDBLite consensus disorder prediction 491 516 - -
Pral526g00012 615 MobiDBLite consensus disorder prediction 601 615 - -
Pral526g00012 615 Gene3D - 173 267 - -
Pral526g00012 615 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
Pral526g00012 615 MobiDBLite consensus disorder prediction 553 579 - -
Pral526g00012 615 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral526g00012 Pral-Chr526 192324 205595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral526g00012 1 522 Inorganic Solute Cotransporters AT2G01280 42.614 1.43e-116 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral526g00012 K15196 - gmx:100817609 693.345