Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral526g00011 ATGATATACTGTGATCACTGTCGGAAACGTGTGCACGGAATGCGACCGGATGATTCTTCATTATGTTGTGAAGCATGTGGGAAGGTTTTGGAAGACATGAATTTTTCTCAAGAGCCCACTTTCATTAAAGATGCATCTGGGCAGAGTAAACTATCAGGTAATTATGTGAGAACAATCCAAAGCGGGTATTCGGCTTCCCGTCAAAGAACATTAGACAGAGCCTTTGATGACATAAGATACCTAAGCCAAAACCTTGGAGTGGAAGATGTCAGGTTGTCCACACAAGCATTGGCCTTTTATAAAATAGCAATTGAACGGAATTTCACAAAGGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGGGCAGAAGATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTTCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTGAGGCTTGAAGAGCACCCAATTGTTCAAAAACCCGTTGATCCTAGTCTTTTTATTTTTAAATATACAAGGAATTTATTAAATCAAAGGAATATCATCGTCACTGAAACTGCACTGAGCATTATTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGTTTATGTGGTGCGGCATTGTATATAGCTGCGCTTGCACATGGTTTTAAATACTCAAAGTCTGACATTCTAAGAATTGTCCATGTGTGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAACCTCTGCAAGCTTGACCGTTGGGGAATTGAAGATGATGGCAAAAGAACGTGAAAAAATTCCTATGGAAAAACCAAATTGTGGATCAGAGGAACATGTCTCAAAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACACTGGGCCCATGGATTATGTGAAAGATGTTATGAGGATTTTGTTAAACTCTCTGGTGGACTTGATGGCGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACCTTGTGAGGAAAGTGGCAACCAATCAAGTGATTTGGCAAAAGCATCAAATGGTATGTGTGCAGGCAGGAAAGAAGAGCTGTATGCTCCTGGGCCAGAAAGTGTTGTAGCCGATGTTGAGCAAATGGCTACTAACGATGGCAGGAATGATGAATCACATGGAGAAGATATGAGTGCTAAAGCTCTTAGTGAATCAGAAAGTCTCTCAGATATTGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAAGAGGAGAAGCATTACAAGACGCTTATATGGAGTGAAATGAATAGGGAGTATCTGGAGGAGCAAGCAGCCAAGGAAGCAGCAGCAGCTGCTGCTAAGGCAACTTTCGAGGCAAATTTTCAAAACTGTTCCGAGGATATGCTAGCAGCGAAAGAGCTTGCTGAATCTGCTGCTGCAGCTGTGGCCAAATCCAGAAAGGAAAAAAAGCAGAGACGTGCCCAGGAGGCAAAAAACTCAGGTCCTGCTCAATCTGCTGCAGAGGCTACTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGATAATTTATTTGACGATATTGAGGCCTCGGAGAACAAGAAAGTACGGTTTGAGCTGCACTCTGGTAAAGGTAGTAAACTAGAGCCTGAGCTAGAGGACAAAGACAAAGGTGATGATATGGGATCTGTTGATAAATTTGAGTATGGAGGTTATATGGGTAAGGAAAATAATTTGCAGGAAGAAAAACTGGCGGAGTATGACTGTGGAGATGATGATTATAGCTATGATGATGACGACTAA 1851 0.4203 MIYCDHCRKRVHGMRPDDSSLCCEACGKVLEDMNFSQEPTFIKDASGQSKLSGNYVRTIQSGYSASRQRTLDRAFDDIRYLSQNLGVEDVRLSTQALAFYKIAIERNFTKGRKSEQVQAACLYIAFRAEDKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTRNLLNQRNIIVTETALSIIASMKRDWMQTGRKPSGLCGAALYIAALAHGFKYSKSDILRIVHVCEATLTKRLVEFENTTSASLTVGELKMMAKEREKIPMEKPNCGSEEHVSKDLLCEHKDSGVPHWAHGLCERCYEDFVKLSGGLDGGLDPPAFQRAERDRMTKSPCEESGNQSSDLAKASNGMCAGRKEELYAPGPESVVADVEQMATNDGRNDESHGEDMSAKALSESESLSDIDDLEVEGYLHNEEEKHYKTLIWSEMNREYLEEQAAKEAAAAAAKATFEANFQNCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDIEASENKKVRFELHSGKGSKLEPELEDKDKGDDMGSVDKFEYGGYMGKENNLQEEKLAEYDCGDDDYSYDDDD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral526g00011 616 MobiDBLite consensus disorder prediction 393 408 - -
Pral526g00011 616 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
Pral526g00011 616 MobiDBLite consensus disorder prediction 554 616 - -
Pral526g00011 616 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 532 IPR000812 GO:0006352|GO:0070897
Pral526g00011 616 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Pral526g00011 616 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Pral526g00011 616 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Pral526g00011 616 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Pral526g00011 616 MobiDBLite consensus disorder prediction 341 363 - -
Pral526g00011 616 Gene3D Single helix bin 409 459 - -
Pral526g00011 616 Pfam Brf1-like TBP-binding domain 417 542 IPR011665 -
Pral526g00011 616 SMART cyclin_7 76 158 IPR013763 -
Pral526g00011 616 SMART cyclin_7 176 259 IPR013763 -
Pral526g00011 616 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Pral526g00011 616 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Pral526g00011 616 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Pral526g00011 616 Coils Coil 489 509 - -
Pral526g00011 616 MobiDBLite consensus disorder prediction 492 517 - -
Pral526g00011 616 MobiDBLite consensus disorder prediction 393 414 - -
Pral526g00011 616 MobiDBLite consensus disorder prediction 602 616 - -
Pral526g00011 616 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Pral526g00011 616 FunFam Transcription factor IIIB subunit 173 262 - -
Pral526g00011 616 MobiDBLite consensus disorder prediction 554 580 - -
Pral526g00011 616 Gene3D - 62 165 - -
Pral526g00011 616 Gene3D - 173 267 - -
Pral526g00011 616 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral526g00011 Pral-Chr526 192324 205595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral526g00011 1 523 Inorganic Solute Cotransporters AT2G01280 42.589 2.56e-116 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral526g00011 K15196 - gmx:100817609 696.812