Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5267g00017 ATGAGTACTTCAGATGAAGAACGCTCGGTTATAGGAAGCAAGGCAGATATAGGGTTTCTAGATTTTGAGGAAGAGAAATCTGTCTATAGTTATGCTCCAAACGAAGAGGATCCTATTGTCATATCTGTCCCATTCCCGTTAGTGAATGAGAAACCGCAATCCATATGTGTTGGCCATACTGCTGTGGATGTAATAACGATCAAGAACACCACAAATGAACCAGTGGAACTGTGGAGTGTTCATATTTTTGCTTCAAGTCCAGAGGACTGTTTCACACTTTCTCTGATGGAACCTCCATCAGCAAATTCAAATGCGGATATTATTCAAGGTTTTCTTGAGTCTTTCTCCTTGGAGGACAGGATGCTTCAACCTGGTGAGATTTTGAAAGTGTGGTTGTCTTGCAAAACAAAGGAACTGGGATTGCACACCACAATTGTATATGTTGACGCAGGGGATGCGAGAATAGAAAGGACGGTTTTTCTCTTAGCTGAAGATAAAATCTCCCAGTCTTTGGCTTCCAGAAAGCCTTATTCAAAAGGAAGAAAGAAAGAGAAATTCGTTGTAAATACTTATGTTTCTGGGTCACGCCCTAGGAGGAAGGGAAATCGTGAGTATAAGAACAAGCTTCCAACATATGACATTCCCAAGGAAATAAGAGAAACACTAGAGGGCAATCAGATCCCTGATGCTATTGAAAGAGGTCTTACAAGGAAGAACTATGCTTCTTATTTCAAAACATTAGTTATGATGGAAGAGCTACAGTTGGAGGAAGACATGAGGACCTATGATATGGAATGCGTAACTATGAGGAAAAGGACGTATCAATTCTTGTCTTTGGAGGTTCCAGGGCTTGCTGAGAGAAGACCGTCACTGGTTCATGGGGACTTTATTTTTGCCAAGCTAGCCTCTGAACATGATAATGATAACACGCCTGCTTACCAGGGTTTTGTCCACCGTGTTGAGGCTGATGAAGTACATTTGAAGTTTCACCCTCATTTTCATTCAGTCCACAAAGAAGAAGATCTCTACAACGTTCACTTCACGTATAATAGGCTCAATATGAGACGGTTATATCAGGCAATTGAGGCTGCAGAAAACCTGGGAAGTGAATTCCTATTTCCGCATGAGACATCTAGAAGGAGGCGCATTGAAACCTCTCATTTGGTGCCTATTTCTGGTAATATTAATGAGGAGCAGATGCTTGCTATCAAGAAGATTCTTCGATGCAAAGGTGCACCTCCTTATCTGATTCATGGTCCTCCAGGTACAGGAAAGACTAGTACAGTAGTCGAAGCGGTCCTCCAGCTCTACAAAAATCATAGGAAAGCTCGTATTCTCATCTGTGCACCGTCAAATAGTGCTGCGGACTACCTACTCGAGAAACTCCTTGGTCAAAAGGCTGTAAAATTTCGAGATGAGGAAATATTTAGGCTTAATGCATCTACGAGGGCTTATGATGATATCAAACCTGAGCTTATCCGGTTCTGCTGCTTTGATGAGTCTGTGTTCAAATGTCCTCCAGTCAGTGCTCTCATGCAATTTAAGATCATAGTATCAACTTATATGAGTGCCTGTCTTCTTTATGCTGAAGATGTCATTCGAGGTCACTTTTCACACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAAACCATGATCCCTATATCTCATCTCTGCAAAAGGGAGACTGTTGTTGTTCTCGCTGGAGACCCAATGCAGTTGGGTCCAGTAATATACTCCAAGGAAGCAGAAACCAATGGATTGGGAAAATCATACTTGGAAAGACTGTTTGAATGTGAATTATATTCCTATGGAGATGATAATTATTTAACCAGATTGATTAGAAACTATAGATGTCACCCACAAATATTACATCTCCCTTCCAGAATGTTTTATGAAGGAGAATTGATTGCATGTAGGGATGATACTAGTTCTTTGTTGCTGAATGAGGACTTCCTCCCAAATAAGGAGTTCCCTGTTCTCTTCTTCGGCATCCAAGGATGTGATGAGAGAGAAGGGTGTAATCCATCATGGTTCAACCGAGTTGAAGTGAGTAAGGTCATAGAACTAGTCAAGAGGCTCACAGCCGGTGGAAATATGAAGGAAGAAGACATTGGGATTATAACACCATATAGGCAGCAAGTACTTAAGATAAAGCAGACACTTGAAAGTATAGATTTGCCGGAGATCAAAGTTGGAAGTGTTGAGCAGTTTCAGGGACAGGAGAGACGAGTTATTATAATATCAACTGTTCGCTCAACAATCAAACATAATGACTTCGACAGAGTGCACTGTTTAGGTTTCCTGAGCAATCATAGAAGATTTAACGTTGCTATAACTCGTGCCATATCACTGCTGATTATTATTGGGAACCCTCACATAATCTCTCGGGACTACTATTGGCACAAACTCTTGTGGCATTGTGTGGACAATTCATCTTATCTTGGTTGTTCTCTTCCTGAAAGACTGGAGGTTCAGGAGGACTCTGGCTTCAAAAATTTTCAAGAAAACTCATTGCCCTCTGAAGATGTGCCGTGGGGTCAAGATTCACCACAATCTGATTCCGAGTTGCCTAAACCAGCTGGCACTGATGAAGCTGAATGGTCTGATGGTTGGAAGTAG 2628 0.4167 MSTSDEERSVIGSKADIGFLDFEEEKSVYSYAPNEEDPIVISVPFPLVNEKPQSICVGHTAVDVITIKNTTNEPVELWSVHIFASSPEDCFTLSLMEPPSANSNADIIQGFLESFSLEDRMLQPGEILKVWLSCKTKELGLHTTIVYVDAGDARIERTVFLLAEDKISQSLASRKPYSKGRKKEKFVVNTYVSGSRPRRKGNREYKNKLPTYDIPKEIRETLEGNQIPDAIERGLTRKNYASYFKTLVMMEELQLEEDMRTYDMECVTMRKRTYQFLSLEVPGLAERRPSLVHGDFIFAKLASEHDNDNTPAYQGFVHRVEADEVHLKFHPHFHSVHKEEDLYNVHFTYNRLNMRRLYQAIEAAENLGSEFLFPHETSRRRRIETSHLVPISGNINEEQMLAIKKILRCKGAPPYLIHGPPGTGKTSTVVEAVLQLYKNHRKARILICAPSNSAADYLLEKLLGQKAVKFRDEEIFRLNASTRAYDDIKPELIRFCCFDESVFKCPPVSALMQFKIIVSTYMSACLLYAEDVIRGHFSHIFLDEAGQASEPETMIPISHLCKRETVVVLAGDPMQLGPVIYSKEAETNGLGKSYLERLFECELYSYGDDNYLTRLIRNYRCHPQILHLPSRMFYEGELIACRDDTSSLLLNEDFLPNKEFPVLFFGIQGCDEREGCNPSWFNRVEVSKVIELVKRLTAGGNMKEEDIGIITPYRQQVLKIKQTLESIDLPEIKVGSVEQFQGQERRVIIISTVRSTIKHNDFDRVHCLGFLSNHRRFNVAITRAISLLIIIGNPHIISRDYYWHKLLWHCVDNSSYLGCSLPERLEVQEDSGFKNFQENSLPSEDVPWGQDSPQSDSELPKPAGTDEAEWSDGWK 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5267g00017 875 Pfam AAA domain 591 794 IPR041679 -
Pral5267g00017 875 FunFam Probable RNA helicase SDE3 344 489 - -
Pral5267g00017 875 Pfam AAA domain 395 482 IPR041677 GO:0004386
Pral5267g00017 875 Pfam AAA domain 510 583 IPR041677 GO:0004386
Pral5267g00017 875 PANTHER CANCER/TESTIS ANTIGEN 55 102 378 - -
Pral5267g00017 875 Gene3D - 620 823 IPR027417 -
Pral5267g00017 875 MobiDBLite consensus disorder prediction 835 875 - -
Pral5267g00017 875 MobiDBLite consensus disorder prediction 835 859 - -
Pral5267g00017 875 CDD SF1_C_Upf1 621 810 IPR047187 -
Pral5267g00017 875 CDD DEXXQc_Helz-like 396 620 IPR026122 GO:0003723|GO:0032574
Pral5267g00017 875 FunFam Probable RNA helicase SDE3 620 819 - -
Pral5267g00017 875 Gene3D - 313 606 IPR027417 -
Pral5267g00017 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 807 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5267g00017 Pral-Chr5267 76821 83440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5267g00017 394 551 Core DNA Replication Machinery Family AT1G08840 35.185 5.84e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5267g00017 K18422 - gmx:100801796 1308.89