Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5265g00060 ATGGCAGAGACTTGGAAATGTGCCAATGTCTGGTTGCTGGTGCTAGTAACGTTGTTCATTGCAGCCACGGCCAGAGTACAGATCTCTGAGCTCAGGAATGTTGGAGCACAGAAATTGGAGAGCTTAACCAACACGTCAATGGCGGCCAGAGCCAAACAGGCGGAGGAATTGAATGAACGTGCTGCGGCTGCTGACCCAGAGGAGGTTGTTTCCCATACTGTAATGACGATCCGGAACAGCACTGAAAGAAGAAAGTTGGGATTTTTCTCCTGTGGAACCGGAAACCCCATTGATGATTGCTGGCGCTGCGACCCCAGCTGGCAACGTAACCGAAAGCGTCTTGCAGACTGCGGTATTGGATTTGGTAGGAACGCCATTGGTGGTCGTGACGGTCGCTTCTATGTCGTCACTGACTCGGGAGACGATGACCCGGTGAACCCAAAGCCCGGCACTCTGCGTCACGCAGTGATCCAGGACACGCCGCTCTGGATTGTATTTAAGCGTGACATGGTGATACAATTGAAGCAGGAGCTCATTGTGAACAGCTTCAAGACCATTGATGGGCGAGGAGCAAATGTGCACATTGCTAACGGAGGGTGCATCACTATCCAGTATGTTACAAATGTAATAATCCACGGTCTCCACATCCATGACTGCAAACCCACAGGCAATGCCATGGTGAGAAGTTCCCCAACACACTTTGGTTGGAGGACAATGGCGGACGGTGATGCCATTTCCATATTTGGATCCAGTCACATTTGGGTCGACCACAATTCCCTCTCTCACTGCGCTGATGGCCTTGTCGACGCTGTCATGGGCTCTACTGCCATTACAATCTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACATTAGGGACAAGCAAATGCAAGTGACCATCGCTTACAACCATTTTGGGGAGGGACTCATCCAGAGGATGCCAAGGTGCAGGCACGGATATTTCCACGTAGTTAACAATGACTACACTCACTGGGAGATGTATGCGATTGGCGGGAGTGCAAACCCCACCATCAACAGCCAGGGGAATAGATACAATGCTCCGCCTAACGCCTTCGCCAAGGAGGTGACAAAGCGAGTGGAGACAGCAGCAAGCCAGTGGCAGGGATGGAACTGGAGGTCGGAGGGAGATCTGATGCTGAACGGTGCTTATTTCACCCCATCTGGTGCTGGAGCTTCAGCCAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAGTCCTCTACAATGGTCGGCACCATGACTTCTAATGCTGGTGCACTCGGCTGCAAAAGAGGCCGTCAGTGCTAG 1332 0.5225 MAETWKCANVWLLVLVTLFIAATARVQISELRNVGAQKLESLTNTSMAARAKQAEELNERAAAADPEEVVSHTVMTIRNSTERRKLGFFSCGTGNPIDDCWRCDPSWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDTPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYIRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPPNAFAKEVTKRVETAASQWQGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSTMVGTMTSNAGALGCKRGRQC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Pral5265g00060 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Pral5265g00060 443 Gene3D - 94 436 IPR012334 -
Pral5265g00060 443 SMART amb_all 169 366 IPR002022 -
Pral5265g00060 443 Pfam Pectate lyase 175 358 IPR002022 -
Pral5265g00060 443 SUPERFAMILY Pectin lyase-like 77 437 IPR011050 -
Pral5265g00060 443 PANTHER PECTATE LYASE 18-RELATED 58 441 IPR045032 GO:0030570
Pral5265g00060 443 FunFam Pectate lyase 94 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5265g00060 Pral-Chr5265 332644 337187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5265g00060 27 443 Polysaccharide Lyase AT4G13710 77.962 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5265g00060 K01728 - gmx:100808253 788.875