LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5265g00054	ATGGGTCGTGGGGGTTCATCAAGATGGTGCCCAACCCAGGAACAGCTTGTGATTCTTGAGGAGATGTACAGAAGTGGGATCAGAACTCCAAATGCGTCCCAGATTCAGCATATCACAGCTCAACTTTCTTTCTATGGCAAGATAGAGGGGAAGAATGTTTTCTATTGGTTTCAGAACCACAAGGCTAGGGACCGACAGAAACTCCGCCGCAGATTGAACAAGCAACTTCAGTTACAGCAGCAGCGGCAACACCAGCTGCTCCTTAACTATTACCTTCACCTTCATCTCAGTCACAACTCTAATCACCATTCTCACTGCCCTATGCAGTCTCTTATTACTGCCTCATCTTCCCAACAATATTCCTTTTCAGAGGGAGGAGCTGCACCAAAACAAGGCATAGATTACAAATGGAGAAGCGAAAATACAGGAGTGATGGAGAAGACGTTGAAGCAAGATTGGGGGACGATGATGGAGTATTACGTATATGACTGTGTGAGAAAGATCTCAATTGTTCAATGA	519	0.4528	MGRGGSSRWCPTQEQLVILEEMYRSGIRTPNASQIQHITAQLSFYGKIEGKNVFYWFQNHKARDRQKLRRRLNKQLQLQQQRQHQLLLNYYLHLHLSHNSNHHSHCPMQSLITASSSQQYSFSEGGAAPKQGIDYKWRSENTGVMEKTLKQDWGTMMEYYVYDCVRKISIVQ	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5265g00054	172	SMART	HOX_1	4	71	IPR001356	GO:0003677
	Pral5265g00054	172	Pfam	Homeodomain	7	66	IPR001356	GO:0003677
	Pral5265g00054	172	SUPERFAMILY	Homeodomain-like	7	67	IPR009057	-
	Pral5265g00054	172	ProSiteProfiles	'Homeobox' domain profile.	2	67	IPR001356	GO:0003677
	Pral5265g00054	172	CDD	homeodomain	8	67	IPR001356	GO:0003677
	Pral5265g00054	172	FunFam	WUSCHEL-related homeobox 4	6	73	-	-
	Pral5265g00054	172	Gene3D	-	2	67	-	-
	Pral5265g00054	172	PANTHER	WUSCHEL-RELATED HOMEOBOX 1-RELATED	2	125	IPR044555	GO:0003700\|GO:0099402

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5265g00054	Pral-Chr5265	297979	299015	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5265g00054	1	74	Wox Gene Family	AT2G28610	79.730	1.13e-39	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-WOX	Pral5265g00054		Homeodomain	2.9e-18	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5265g00054	-		-	twl:120002012	125.176