Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5265g00008 ATGTATTGGGGAGGCATGGCTGGGAACAACATGGGTTGGGGCATGAATATGATAGAGGAAGAAGGTTGGAGGAAGGGTCCCTGGACTGCTGAAGAAGACAGATTGCTTATTGAATATGTTCGGCTTCATGGTGAAGGCAGATGGAATTCTGTCTCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATTTGAGGCCTGACCTCAAGAAGGGTCAGATAACACCTCAGGAAGAGAGTATCATTCTTGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGTTTACCAGGAAGAACCGACAATGAGATTAAAAACTACTGGAGGACTCATTTCAAGAAGAAGGCAAAAAATTCTCCTGATTCTGCTGAAAAAGCAAAAAATCGCCTCATAAGGAGACAACAATTTCAGCAGCAACAACAGCAAATGCAGCAACATCAGCAACAACAACAGCAGCAGCAGCAGCAACAACAACTGCAATTTAACTTGGACATCAAAGGGATTATGGCTCTCCTGGAGGAAAATGATCATAGAGTGGCTATGCCTTGGAGGCAAGAAATGTACCAGAACACCATGGAAGAACAAGGCTGCTTCTACTCTATGCTCAATGGCAATGCCTCTGCATCAGAACCTTCAAATGATGATACTTTCTGGGATGGCCTGTGGAACTTGGATGATTTTCATGGAAATTTCAGTGCAGCAAGCAAAGCCAATCTACACAATTTAGTTGCCCCCTTCTGCTAG 777 0.4427 MYWGGMAGNNMGWGMNMIEEEGWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNSPDSAEKAKNRLIRRQQFQQQQQQMQQHQQQQQQQQQQQQLQFNLDIKGIMALLEENDHRVAMPWRQEMYQNTMEEQGCFYSMLNGNASASEPSNDDTFWDGLWNLDDFHGNFSAASKANLHNLVAPFC 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5265g00008 258 Gene3D - 25 77 - -
Pral5265g00008 258 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Pral5265g00008 258 Gene3D - 82 126 - -
Pral5265g00008 258 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Pral5265g00008 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 218 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral5265g00008 258 SMART sant 24 74 IPR001005 -
Pral5265g00008 258 SMART sant 77 125 IPR001005 -
Pral5265g00008 258 FunFam MYB-related transcription factor 82 126 - -
Pral5265g00008 258 CDD SANT 27 72 IPR001005 -
Pral5265g00008 258 Coils Coil 144 167 - -
Pral5265g00008 258 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Pral5265g00008 258 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Pral5265g00008 258 FunFam Myb transcription factor 25 77 - -
Pral5265g00008 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 72 IPR017930 -
Pral5265g00008 258 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pral5265g00008 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
Pral5265g00008 258 CDD SANT 82 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5265g00008 Pral-Chr5265 60122 61762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5265g00008 20 258 MYB Transcription Factor Family AT3G24310 56.870 4.52e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5265g00008 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5265g00008 K09422 - gmx:100795981 355.91