Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5262g00003 ATGGAGGCTCCTACTCTCACCGGCTTGCTCAATCGAATCTCCGCCGAATTCCCCTCCCGTCGTGCCATCTCCGTCTCCGGCAAGTTCGATCTCACCTACTCTCGTCTTCTCGAACTCGTCGAACGCGCAGCTTCTCGTTTAGTCTCATCTGGAATCAACGCCGGCGATGTCGTCGCTCTTACCTTCCCCAATACCGTCGAGTTCGTGATAATGTTTTTGGCCGTAATTCGTGCACGAGCCACGGCCGCGCCACTGAACCCAGCCTATACGGCCGAGGAGTTCGAGTTTTACTTATCCGACTCGGAGTCGAAGCTCTTGTTGACGTCCCAAGAAGGGAATGGTTCGGCTCAAGACGCGGCTTCGAAGCTTAATATCCCTCACGTGACGGCTTCGCTTTCCAAAGCCGATGACGCCGAGCTCAGTCTCTCTCTGACTCAGAACCAATCGAGATCGGACTTGGCCGCCAAACTCGTCAACGACCCGTCCGACGTGGCCCTATTCCTCCACACCTCAGGCACGACGAGCCGGCCCAAAGGAGTGCCTCTAACTCAGCACAACTTGGCCGCCTCGGTTCAGAACATCAAGTCCGTGTACAAACTCACTGAGTCCGATTCGACGGTGGTCGTTCTGCCACTCTTTCACGTCCACGGACTCATCGCGGGATTACTGAGTTCGCTCTGTGCGGGGGCCGCTGTGGCGCTGCCGGCGGCTGGCCGTTTCTCGGCTTCCACGTTTTGGGCAGATATGCTGAATTACAACGCGACGTGGTATACGGCGGTCCCTACCATACACCAGATCATACTGGATCGTCACTCGAACAAGCCCGAACCCCACCCGAAACTCCGATTTGTTCGGAGTTGCAGCGCGTCGCTCGCACCGATTATATTGGGTCGGCTGGAGGAGGCATTTGGAGCGCCGGTTTTGGAGGCCTATGCAATGACGGAAGCGTCCCATCTAATGTCATCAAACCCGTTGCCGGCGGACGGGCCGCACAAGCCCGGGTCGGTGGGGAAACCAGTGGGTCAAGAAATGTCAATCCTGAACGAGAAGGGAGAGATCCAGAAGGCTGAAGTTCCAGGAGAGGTCTGCATCAGGGGTCCGAATGTGACAAAAGGATACAAAAATAATCCGACAGCTAATACGACAGCGTTTGAGTTCGGATGGTTCCACACCGGTGATCTCGGGTTTTTTGATTCAGACGGGTATTTGCATCTGGTTGGCCGAATTAAGGAGCTCATTAATCGTGGAGGGGAGAAAATATCACCCATAGAAGTGGATGCTGTCCTGTTATCTCATCCGGACGTTGCTCAGGCGGTTGCTTTCGGAGTGCCTGACGATAAGTATGGCGAGGAGATAAATTGTGCAGTAATAGCAAGAGAAGGATCAGAAATTGACGAGGAAGAGGTGTTAAGGTTTTGCAAGAAGAATCTTGCATCCTTCAAAGTACCCAAGAAGGTTTTCGTCACTGATTCTTTGCCGAAGACTGCCACCGGCAAGATCCTCCGCCGTCTTGTCGCTGAGCACTTCGTTTCTCAAAAGTGA 1542 0.5402 MEAPTLTGLLNRISAEFPSRRAISVSGKFDLTYSRLLELVERAASRLVSSGINAGDVVALTFPNTVEFVIMFLAVIRARATAAPLNPAYTAEEFEFYLSDSESKLLLTSQEGNGSAQDAASKLNIPHVTASLSKADDAELSLSLTQNQSRSDLAAKLVNDPSDVALFLHTSGTTSRPKGVPLTQHNLAASVQNIKSVYKLTESDSTVVVLPLFHVHGLIAGLLSSLCAGAAVALPAAGRFSASTFWADMLNYNATWYTAVPTIHQIILDRHSNKPEPHPKLRFVRSCSASLAPIILGRLEEAFGAPVLEAYAMTEASHLMSSNPLPADGPHKPGSVGKPVGQEMSILNEKGEIQKAEVPGEVCIRGPNVTKGYKNNPTANTTAFEFGWFHTGDLGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDVAQAVAFGVPDDKYGEEINCAVIAREGSEIDEEEVLRFCKKNLASFKVPKKVFVTDSLPKTATGKILRRLVAEHFVSQK 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5262g00003 513 Gene3D - 5 408 IPR042099 -
Pral5262g00003 513 PANTHER ACYL-COA SYNTHETASE 6 511 - -
Pral5262g00003 513 CDD FACL_fum10p_like 18 507 IPR045310 GO:0016874
Pral5262g00003 513 Pfam AMP-binding enzyme C-terminal domain 424 499 IPR025110 -
Pral5262g00003 513 Gene3D - 409 511 IPR045851 -
Pral5262g00003 513 ProSitePatterns Putative AMP-binding domain signature. 167 178 IPR020845 -
Pral5262g00003 513 FunFam 4-coumarate--CoA ligase 2 411 512 - -
Pral5262g00003 513 Pfam AMP-binding enzyme 14 415 IPR000873 -
Pral5262g00003 513 FunFam Peroxisomal-coenzyme A synthetase 5 408 - -
Pral5262g00003 513 SUPERFAMILY Acetyl-CoA synthetase-like 5 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5262g00003 Pral-Chr5262 29043 33321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5262g00003 5 512 Monolignol Biosynthesis Gene Families AT4G05160 31.429 2.56e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5262g00003 K22133 - qsa:O6P43_004296 831.632