Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5259g00001 ATGCCAGGAGGTGGACAAGTGACAGTTCCTCCGGGTTTCCGGTTTCACCCAACTGAGGAAGAACTTCTTTACTATTACCTCAGGAAGAAGGTCTCTTATGAAGCCATTGACCTCGACGTCATCAGAGAAGTTGATCTTAACAAACTTGAGCCCTGGGACCTCAAAGAAAAGTGTAGGATTGGATCAGGGCCACAGAACGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTACCCAACAGGAACAAGAACAAATAGGGCAACCACTGCTGGGTTTTGGAAAGCCACAGGAAGGGATAAAGCCATTTATCTCACTAATTCCAAGAGGATTGGCCTCAGAAAAACCCTCGTCTTCTACACTGGTCGTGCTCCTCACGGCCAAAAGACTGATTGGATCATGCACGAGTATCGCCTTGACGAAGATGACCTCCACGTTCAGGAAGATGGATGGGTAGTGTGTAGGGTTTTCACGAAGAAGAATCTCAACAGAGGCTACCTGCAACCAGAAAAGGAAGAGGAAGAGTACTTAGCTACTCAAATGAGAACAAGAAGCGGATCAAACCAGCAGGTATTAGACCCAAGACAGCACTACCATCACCGTCACCATCATCACATGCAAGCACTATATGATCATCATAACTATAGCCTTGATGGATCAATCCACCTACCCCAATTGTTCAGTCCTGAATCTGCAGTATTACCCAACGCCATGGACGAAGTAGTCGAATGCTCTCACAACTTGTTGAAGCTTACAAGTGGCAGTAATAATGGCGGCTGCGGACTCAATCTTAATCTCAGTAACTATAATGATGATCACTGGTCTTTCTTGGACAAGCTTCTTGCTTCACACCACCACAGATTCATTCCTTCTTCAAATGATCATTCTGGTGTTGTGGCTTCTTCGACCCACCAGCAATTCCCAGCTGTTCATTACCTTTCTGGTTGTGACACTACCCGTGACATTCTCAGGTTCTCCAAGTAG 981 0.4597 MPGGGQVTVPPGFRFHPTEEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKEKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLTNSKRIGLRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDLHVQEDGWVVCRVFTKKNLNRGYLQPEKEEEEYLATQMRTRSGSNQQVLDPRQHYHHRHHHHMQALYDHHNYSLDGSIHLPQLFSPESAVLPNAMDEVVECSHNLLKLTSGSNNGGCGLNLNLSNYNDDHWSFLDKLLASHHHRFIPSSNDHSGVVASSTHQQFPAVHYLSGCDTTRDILRFSK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5259g00001 326 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Pral5259g00001 326 FunFam NAC domain-containing protein 18 162 - -
Pral5259g00001 326 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Pral5259g00001 326 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Pral5259g00001 326 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Pral5259g00001 326 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5259g00001 Pral-Chr5259 21007 24349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5259g00001 1 282 NAC Transcription Factor Family AT1G79580 61.859 1.71e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5259g00001 NAM 5.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5259g00001 - - gmx:100789606 439.113