Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5258g00077 ATGGCAAATCAACTCTATCTCTATGCGTATAGCCCTACCTACGGAGGAGCTTCACCGCCTTCCGCCGCCGCGGCCACCACAAGCACTGCCAGTACCCTTTCTTCCAGCCGATATCTTTCTACCGATATGTATTTTCCTCAACGCAAAGACTCCATTATTCGATACTCTTCTTACGCCGCTTCCGATGCCGACATTGCTCCACCTGGTGTTTCTACCAGACTCTCCAGCGCTGCCTCCGGACAAACAGCTTCAACCGCTACTCAGTTGCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTGCAGCTGCTGCAGCAAATGCTGGGTCGGCTGCATTGGACTCGATTGTTAACCTGAAACGCTCTTCTGATGCGCTCTACCATCCAACTGTTTTGCAAACCCATAACACGATTGGGCAAAGTGAAGCTTGGTATTCTACAAATTCATTAACAAAGCGCCCTAGATACGAGAGTACAAGCAATTTGCCTATATATCCTCAGAGGCCAGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTTCCAAGTGTTGTTACAAGTGAGACTCTTCCTGAAAGACCAGGAGAACTGGATTGTCCATACTTTCTTAAAACTAAGAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAACCATCCCATGCATTTGTTTGAAAATGCTGATGTTTCCACCTTACCTGAGAGGCCTTCAGAGCCCCCATGCGCGTTCTACATGAAAACTGGAACATGTAAGTTTGGTATTACCTGTAAATTTCATCACCCAAGAGACATACAGATTCAGCTATCTGAAGAACAGAATGGTGCTGCTGGGCAGACCTACTTGACCCCTAATATAAAAGGGGCTTCAGGAGATACACAATTATCTAATCTTTTTAGTTCGTACACTGCTCCTGTATTGCATAATAGCAAAGGGCTTCCTGTAAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAGACTGGCAGTTGCAAATACGGTGCTACATGCCGCTACAATCATCCTGATAGGAATGTAATTAACCCACCTGCTGCTGGGTTAGGCCATTCTGTTTTGACATCATCAGCTGCTAATCTTAACTTTGGAATAGTAAATCCAGCTGCATCAATTTATCAAGCTATTGACCCCAGATTGTCAAGTGCTGCGTCCCAGGTGGGAATAGCACCAACCGTCTATCCTCAACGACCAGGACAGATTGAGTGTGATTACTACATGAAGACTGGAGAGTGTAAATTTGGAGAAAGATGCAAGTTCCATCACCCAATTGATCGCTCAGCACCATCACAATCAAATTCAGCTGCACAACAATCTATTAAACTCACTCTTGCGGGATTACCGAGGAGAGAGGGTGTTGTAATCTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCTCCTCCTGGGGAGGTTATGGAGATGGCGAAGACGCAAGGAGCAAATGAAACCGATGGAGAGGAAGCAGAAGCTGATGAAACACAGGGTGATTCTGTTCAGGAAAAGAAGTGA 1626 0.4557 MANQLYLYAYSPTYGGASPPSAAAATTSTASTLSSSRYLSTDMYFPQRKDSIIRYSSYAASDADIAPPGVSTRLSSAASGQTASTATQLLSQASWPAAIAAAAAANAGSAALDSIVNLKRSSDALYHPTVLQTHNTIGQSEAWYSTNSLTKRPRYESTSNLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPSVVTSETLPERPGELDCPYFLKTKRCKFGSRCKFNHPMHLFENADVSTLPERPSEPPCAFYMKTGTCKFGITCKFHHPRDIQIQLSEEQNGAAGQTYLTPNIKGASGDTQLSNLFSSYTAPVLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPAAGLGHSVLTSSAANLNFGIVNPAASIYQAIDPRLSSAASQVGIAPTVYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSQSNSAAQQSIKLTLAGLPRREGVVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKTQGANETDGEEAEADETQGDSVQEKK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5258g00077 541 SUPERFAMILY CCCH zinc finger 482 506 IPR036855 GO:0046872
Pral5258g00077 541 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Pral5258g00077 541 FunFam Zinc finger CCCH domain-containing protein 37 326 373 - -
Pral5258g00077 541 SUPERFAMILY CCCH zinc finger 428 454 IPR036855 GO:0046872
Pral5258g00077 541 ProSiteProfiles Zinc finger C3H1-type profile. 426 454 IPR000571 GO:0046872
Pral5258g00077 541 SMART c3hfinal6 479 506 IPR000571 GO:0046872
Pral5258g00077 541 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Pral5258g00077 541 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Pral5258g00077 541 SMART c3hfinal6 260 287 IPR000571 GO:0046872
Pral5258g00077 541 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Pral5258g00077 541 SMART c3hfinal6 426 453 IPR000571 GO:0046872
Pral5258g00077 541 SUPERFAMILY CCCH zinc finger 344 368 IPR036855 GO:0046872
Pral5258g00077 541 SUPERFAMILY CCCH zinc finger 263 288 IPR036855 GO:0046872
Pral5258g00077 541 FunFam zinc finger CCCH domain-containing protein 37 424 520 - -
Pral5258g00077 541 MobiDBLite consensus disorder prediction 509 541 - -
Pral5258g00077 541 ProSiteProfiles Zinc finger C3H1-type profile. 260 288 IPR000571 GO:0046872
Pral5258g00077 541 SUPERFAMILY CCCH zinc finger 224 247 IPR036855 GO:0046872
Pral5258g00077 541 FunFam Zinc finger CCCH domain-containing protein 37 123 204 - -
Pral5258g00077 541 ProSiteProfiles Zinc finger C3H1-type profile. 479 507 IPR000571 GO:0046872
Pral5258g00077 541 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Pral5258g00077 541 Gene3D - 251 298 - -
Pral5258g00077 541 Gene3D - 325 372 - -
Pral5258g00077 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 193 IPR000571 GO:0046872
Pral5258g00077 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 366 IPR000571 GO:0046872
Pral5258g00077 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 246 IPR000571 GO:0046872
Pral5258g00077 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 429 452 IPR000571 GO:0046872
Pral5258g00077 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Pral5258g00077 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 481 506 IPR000571 GO:0046872
Pral5258g00077 541 Gene3D - 423 521 - -
Pral5258g00077 541 Gene3D - 165 250 - -
Pral5258g00077 541 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Pral5258g00077 541 PANTHER PROTEIN PHOSPHATASE RELATED 327 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5258g00077 Pral-Chr5258 551467 560745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5258g00077 338 518 C2H2 Transcription Factor Family AT3G02830 36.813 6.37e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5258g00077 zf-CCCH 7.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5258g00077 - - pcin:129313610 923.309