Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5258g00076 ATGGCAAATCAACTCTATCTCTATGCGTATAGCCCTACCTACGGAGGAGCTTCACCGCCTTCCGCCGCCGCGGCCACCACAAGCACTGCCAGTACCCTTTCTTCCAGCCGATATCTTTCTACCGATATGTATTTTCCTCAACGCAAAGACTCCATTATTCGATACTCTTCTTACGCCGCTTCCGATGCCGACATTGCTCCACCTGGTGTTTCTACCAGACTCTCCAGCGCTGCCTCCGGACAAACAGCTTCAACCGCTACTCAGTTGCTATCTCAAGCTTCTTGGCCTGCTGCTATTGCTGCAGCTGCTGCAGCAAATGCTGGGTCGGCTGCATTGGACTCGATTGTTAACCTGAAACGCTCTTCTGATGCGCTCTACCATCCAACTGTTTTGCAAACCCATAACACGATTGGGCAAAGTGAAGCTTGGTATTCTACAAATTCATTAACAAAGCGCCCTAGATACGAGAGTACAAGCAATTTGCCTATATATCCTCAGAGGCCAGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTTCCAAGTGTTGTTACAAGTGAGACTCTTCCTGAAAGACCAGGAGAACTGGATTGTCCATACTTTCTTAAAACTAAGAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAACCATCCCATGCATTTGTTTGAAAATGCTGATGTTTCCACCTTACCTGAGAGGCCTTCAGAGCCCCCATGCGCGTTCTACATGAAAACTGGAACATGTAAGTTTGGTATTACCTGTAAATTTCATCACCCAAGAGACATACAGATTCAGCTATCTGAAGAACAGAATGGTGCTGCTGGGCAGACCTACTTGACCCCTAATATAAAAGGGGCTTCAGGAGATACACAATTATCTAATCTTTTTAGTTCGTACACTGCTCCTGTATTGCATAATAGCAAAGGGCTTCCTGGTGAAGTAGATTGTCCATTCTACATGAAGACTGGCAGTTGCAAATACGGTGCTACATGCCGCTACAATCATCCTGATAGGAATGTAATTAACCCACCTGCTGCTGGGTTAGGCCATTCTGTTTTGACATCATCAGCTGCTAATCTTAACTTTGGAATAGTAAATCCAGCTGCATCAATTTATCAAGCTATTGACCCCAGATTGTCAAGTGCTGCGTCCCAGGTGGGAATAGCACCAACCGTCTATCCTCAACGACCAGGACAGATTGAGTGTGATTACTACATGAAGACTGGAGAGTGTAAATTTGGAGAAAGATGCAAGTTCCATCACCCAATTGATCGCTCAGCACCATCACAATCAAATTCAGCTGCACAACAATCTATTAAACTCACTCTTGCGGGATTACCGAGGAGAGAGGGTGTTGTAATCTGTCCATATTATTTGAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCTCCTCCTGGGGAGGTTATGGAGATGGCGAAGACGCAAGGAGCAAATGAAACCGATGGAGAGGAAGCAGAAGCTGATGAAACACAGGGTGATTCTGTTCAGGAAAAGAAGTGA 1617 0.4558 MANQLYLYAYSPTYGGASPPSAAAATTSTASTLSSSRYLSTDMYFPQRKDSIIRYSSYAASDADIAPPGVSTRLSSAASGQTASTATQLLSQASWPAAIAAAAAANAGSAALDSIVNLKRSSDALYHPTVLQTHNTIGQSEAWYSTNSLTKRPRYESTSNLPIYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPSVVTSETLPERPGELDCPYFLKTKRCKFGSRCKFNHPMHLFENADVSTLPERPSEPPCAFYMKTGTCKFGITCKFHHPRDIQIQLSEEQNGAAGQTYLTPNIKGASGDTQLSNLFSSYTAPVLHNSKGLPGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPAAGLGHSVLTSSAANLNFGIVNPAASIYQAIDPRLSSAASQVGIAPTVYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSQSNSAAQQSIKLTLAGLPRREGVVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKTQGANETDGEEAEADETQGDSVQEKK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5258g00076 538 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Pral5258g00076 538 FunFam zinc finger CCCH domain-containing protein 37 421 517 - -
Pral5258g00076 538 Gene3D - 165 253 - -
Pral5258g00076 538 Gene3D - 421 518 - -
Pral5258g00076 538 MobiDBLite consensus disorder prediction 506 538 - -
Pral5258g00076 538 ProSiteProfiles Zinc finger C3H1-type profile. 423 451 IPR000571 GO:0046872
Pral5258g00076 538 PANTHER PROTEIN PHOSPHATASE RELATED 327 381 - -
Pral5258g00076 538 SUPERFAMILY CCCH zinc finger 263 288 IPR036855 GO:0046872
Pral5258g00076 538 SUPERFAMILY CCCH zinc finger 425 451 IPR036855 GO:0046872
Pral5258g00076 538 SUPERFAMILY CCCH zinc finger 342 365 IPR036855 GO:0046872
Pral5258g00076 538 ProSiteProfiles Zinc finger C3H1-type profile. 476 504 IPR000571 GO:0046872
Pral5258g00076 538 ProSiteProfiles Zinc finger C3H1-type profile. 260 288 IPR000571 GO:0046872
Pral5258g00076 538 SUPERFAMILY CCCH zinc finger 224 247 IPR036855 GO:0046872
Pral5258g00076 538 FunFam Zinc finger CCCH domain-containing protein 37 123 204 - -
Pral5258g00076 538 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Pral5258g00076 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 193 IPR000571 GO:0046872
Pral5258g00076 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 478 503 IPR000571 GO:0046872
Pral5258g00076 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 246 IPR000571 GO:0046872
Pral5258g00076 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 426 449 IPR000571 GO:0046872
Pral5258g00076 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Pral5258g00076 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 339 363 IPR000571 GO:0046872
Pral5258g00076 538 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Pral5258g00076 538 SUPERFAMILY CCCH zinc finger 479 503 IPR036855 GO:0046872
Pral5258g00076 538 Gene3D - 258 374 - -
Pral5258g00076 538 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Pral5258g00076 538 SMART c3hfinal6 260 287 IPR000571 GO:0046872
Pral5258g00076 538 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Pral5258g00076 538 SMART c3hfinal6 476 503 IPR000571 GO:0046872
Pral5258g00076 538 SMART c3hfinal6 423 450 IPR000571 GO:0046872
Pral5258g00076 538 SMART c3hfinal6 337 364 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5258g00076 Pral-Chr5258 551466 560745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5258g00076 338 515 C2H2 Transcription Factor Family AT3G02830 36.872 7.98e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5258g00076 zf-CCCH 7.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5258g00076 - - pcin:129313610 914.064