Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5258g00065 ATGGCTACCACCACAACTGCCGCCGCTGCTCCTCCGCGTCAGCTCTCCCAGAAGGAAGCTGATATCCAGATGATGTTGGCCGCCGAGGTCCACCTCGGTACCAAGAACTGCAACTTCCAAATGGAACGATATGTGTTCAAGCGCCGCAACGACGGGATCTACATCATTAATCTTGGAAAAACATGGGAGAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCCACTGAGAACCCTCAAGATATCATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCCGTTCTCAAGTTTGCTCAATACACTGGGGCCCATGCACTTGCCGGGAGACACACTCCTGGTACATTCACAAATCAGCTCCAAACCTCTTACAGTGAGCCTCGCCTTCTAATTCTAACTGATCCAAGAACGGACCATCAGCCCATCAAGGAAGCTGCCCTTGGAAATATTCCAACCATTGCCTTTTGTGACACTGATTCCCCTATGCGATATGTTGACATTGGGATTCCTGCCAATAACAAGGGGAAACATAGCATTGGTTGTCTCTTTTGGCTTTTAGCAAGGATGGTGCTGCAGATGCGTGGTACTATTCGTCCAGGGCTTAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGGGAACCTGAGGAAGCCAAGCAACTAGAGGAAGAGGAGGCGCTTGCTGTCCAAAATTATGCCGCTGCAGATTTTGGTGCCGGTATTGGTGCCATTGCTGATGGCCAGTGGCCTGTTGCAGCTGATCAATCATGGACTGAACCAGTAGCACAACCTATTCCAGCAGTTCCTGGTGTCAGCTGGACCTCAGAAGCTGCAGTAGGGAATTGGGGTGAAGCCGTCCCACCTCCACAAGCACCTGTTTCCGGAGTCGAGAATATTCCTGCTAGCGGCTGGGATTAA 915 0.5038 MATTTTAAAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVATENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQLEEEEALAVQNYAAADFGAGIGAIADGQWPVAADQSWTEPVAQPIPAVPGVSWTSEAAVGNWGEAVPPPQAPVSGVENIPASGWD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5258g00065 304 Gene3D - 21 227 - -
Pral5258g00065 304 FunFam 40S ribosomal protein SA 21 227 - -
Pral5258g00065 304 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pral5258g00065 304 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 PANTHER 40S RIBOSOMAL PROTEIN SA 12 291 IPR005707 GO:0003735|GO:0006412|GO:0015935
Pral5258g00065 304 MobiDBLite consensus disorder prediction 280 304 - -
Pral5258g00065 304 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Pral5258g00065 304 Hamap 40S ribosomal protein SA [rps-0]. 9 275 IPR027498 GO:0003735|GO:0006412|GO:0015935
Pral5258g00065 304 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Pral5258g00065 304 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5258g00065 Pral-Chr5258 510680 513270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5258g00065 1 304 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 69.935 1.03e-151 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5258g00065 K02998 - gmx:548014 509.22