Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5258g00056 ATGGAGATTGAGCTTCTGTTCTTCATCATTCTAATAGCAGCAGCTGATGCTCAGTCCCTTGCAGGTTGTCCTAACAAATGCGGAGATGTGGACATTCCTTATCCATTTGGGGTAGGGGTACAACCTGGTACTTCTCGAAACTGTTTCTTAGACAAATCATTCAATCTCACTTGTGACAACTCCACATCCACGTTATACTTCGGAAACGCCTTAGTTTCCAACATCTCCTTCCGACAAAATCAAATGGAGATCTCAACCTTTGTCTCCACGGCTTGTTTCAATCAATCAGGACCAGAAAGTATACACCCTCACCGTATTCTCACCGATTCCTTCACCATTTCCAACACACAAAACAAGTTCATTACTTTTGGTTGCGACGCTTTGGGCATAATAAGGTTCCAGAACCATTTGCGGGACAACTTCACCTATTACAGTGGTTGCGTGGCACTATGTGACAGACCTCCAAAAAACATGGGTGATCAGACTTGTACAGGAACTGGGTGTTGCCAAGTGGATATACCTGAGGGAATCAATAATATCAGTTATGGAGTATCTAGTGTTTATAATCATACCAACGTGTCGGCATTCAACAACTGCAGCTATGCTTTTGCTGCCAAACATGACTGGTTTAGTTTCTCACTCGATTATCTGCAGTACTTTCCCTATGATAAAGTCCCACTCGTCCTAGATTGGACTGTTTCAAATGATACCTGTCAGAACGCTTCTGAAAAAGCAGACTATGCCTGCAAATCCAACTCAGATTGCGTAGATTCCACTTTTGGAGCTGGGTACAACTGCATATGCAAGCCCGGCTTTGAGGGAAATCCATATCATCCAGATGGATGTCACGATGTTGATGAGTGTGGCAAATCAAATAACTGTAGCATGCCAAAGCAATGTCGCAATTTCGATGGTACTTACCAATGTTCTTGTCCACATGGATATAAAGGCGATGGCTACATTAATGGAACAGGCTGCACTTTGGACACACATGAATATAGTAATCGTCGTTTGCTGGTTCTTATAACTGCCTTAGGCATTAGTGTTGCACTGTTAGTTGCCTTTACATTGGTCTCCACATTATGCTGGGCACGCAAGCAAAGAACTTTGAAACAACTTAGACAAAAAAACTTCGTGCAAAATGGAGGAAACTTATTGCTGGAACAATTTTCGCAACATCAAGGGTACTCTAATCAAACAAAAATATTTGCAGAAGTTGAGCTCAAAAATGCCACAAACAACTTTGATGAGTGTCGAATCCTTGGTCGTGGGGGGCAAGGCATAGTTTATAAGGGTTTATTACCGGACAATACACTTGTTGCCATTAAGAAGTCCAAAGTAGGAGGAAATCCTAGACAAATTAAGGATTTTATCAATGAAGTGTTTGTGCTCTCTCAAGTCAATCATCGAAATATTGTCAAATTGTTGGGTTGTTGTCTTGAAACTGATGTCCCTTTGTTGGTATACGAGTTTGTAAATAATGGCATCCTTGATCACATAGATCCTTTGAAGAATGAGTTTTCTATTCCATGGGAGACTCGATTGAGAATAGCTGCAGAAACTGCTGAGGCTATTTCATATCTGCACTCATATGCTTCAATCCCAATTATTCATCGGGATATTAAATCTACCAACATACTTTTAGACCATAACCTTAGAGCAAAGGTGTCTGACTTTGGAGCTTCAAAACTTATTCCTCTCGACGAAACTCATGTTACAACTGTGGTACAAGGGACTCTTGGATACTTGGATCCAGAATATCTCCACATAGGTCAATTGAATGAGAAAAGCGATGTTTACAGTTTTGGAGTTGTACTTGTGGAATTGCTCACGGGTAAAAACATTGAATTTAGCAGGCCAGAACAGAAAAATCTAGCCATGTATTTTGTGTCTTCAATGAAAGAAGACCATCTACTAGAAATTCTTGATAAGCGAGTGTTAGATAGAAAGAATGCAAATCAGCTTAAGGAAATAGCCTTATTAGCAAGGAGATGTGTTAGAGTAAAAGGAGAGGAAAGGCCCACTATGAAGGAAGTAGCGAAGGAACTAGAGGGTATGATTGCAATGAAAAAGCATGTTTGGGCAATGAAAGGTGATGAAGAGAGTATGTCAGAAGAAAGCGAATATTTACTTGGACATGTACCAAATATGTATAGGGAAACAGGGGCTATGATGATGAAGATGGGGCTGGAACTGCTCTTTCTCGTTAGTCTTTTAGCTGCATCTGAAGCTCAGTCCCTTGCCGGTTGTCCCAACAAATGTGGAGATGTGGAGATTCCATATCCTTTTGGAGTGGGGATACAACCTGGTACTTCTCGAAACTGTTTCTTTGATCAGTCGTTTAATCTCAATTGTGACAACTCCACGTCTACGTTATACTTCGAGAATTTTCCAGTTTCGAACATATCCCTCCAACAAAGTCAAATGGAAATCTCCATGGCTGTTTCCAATGGTTGTTTTAACGCATCAGGCAAAGATCTTTCTCTTTACACCAAAGCCTTCACCGTTTCCAGCACCCAGAACAAGTTCCTAACTGTTGGTTGCGACGCTTTGGGCGTAATTAGTTTCGAAAAAAACTTCACTTATTACAGTGGCTGTGTTGCGTTATGTGACAAACCTCCTTCAAGAGAGATCAATGATAAGACTTGTTCCGGGACTGGTTGTTGCCAAGTGGATATTCCCAAGGGAATGAACAATATCAGTTTTTTTGCTTCTACTGTCACAAATCATACCAACGTATCGGCCTTCAACAATTGTACCTCTGCTTTTATTTCCAAAAATGGTTGGTTTAGCTTCTCCCCAGATTATCTAGGCGAATTTCCCTTTGAAAGGGCTCCACTTGTCTTAGATTGGACTGTTTCAAATGGTACTTGTCAAACTGCTGCCTCCAGTAGTAATAACACAGCAGAAGACTATGCCTGCAAATCCAACACAGATTGTGTGGATTCCAGTGATGGGGTTGGGTACAAATGCAAATGTAAACCCGGCTTTGAGGGAAATCCATATCACCCAGATGGATGTCAAGATGTTGATGAATGTAGCAGACCCAACAACTGCAGTATGTCAAGGCAATGCCACAATTTTGATGGCACCTATCGTTGTTCTTGTCCACCTGGATACAAAGGCGACGGCTATACTAACGGAACAGGCTGCACTTTGGATACTCCTCGATCTAATCATCAATTGCTTATTCTTATAATTGCATTAGGCATTAGTGTAGCCTTGTTGGCTGTCATTGCACTGATTTCAACAGTATGTTGGGCACACAAGCGAAGAACTCTGAAACAACTTAGACAGAAAAATTTTGTGCAAAATGGAGGATACATGCTGTTACAACAACTTTCACAACATCAAGGATACACTGAGAAAACCGAAATATTTACAGAAGTTGAGCTTAAGAACGCCACAAACAACTTTGATGAGTCTAGAATTCTGGGTCGCGGGGGTCAAGGCACGGTGTATAAAGGTATATTACCAGACAATAAAATTGTTGCCATTAAGAAGTCTAAAGTAGGAGGGACTCCTAGACAGATCAAGGATTTTATTAATGAAGTGTTTTTGCTTTCCCAAATCAACCACCGAAATGTTGTCAAACTTTTGGGATGTTGTCTTGAAACTGACATCCCTTTGTTAGTATACGAGTTTGTGGACAATGGCACGCTTCTTGACCACCTAGATCCTTTGAAAAATGAGTTTTCTATTCCTTGGGAAGTTCGATTAAGGATAGCTGCAGAAACTGCTGGAGCTATTTCATATTTGCACTCTTCTGCTTCCATTCCAATTATTCATCGGGATATTAAATCCACCAACATACTTTTAGATCATAATCTAAAAGCAAAAGTGGCTGACTTTGGAGCGTCAAGACTTATTCCTCTTAATGAAACTCATGTCACCACGATGATACAAGGGACTTTTGGATACTTGGATCCAGAGTACCTCCACATAGGTCAGCTGAATGACAAAAGCGATGTTTATAGTTTTGGGGTTGTGCTTGTGGAATTGCTCACAGGAAATAAAGCAGCTGAATTTAGATGGTCAGAAGAGAAAAATTTGGTAATGTATTTTGTGTTTGCAATGAGAGAAAACCGTTTGTGGGAGATTCTTGACAGACGACTGTTAGACCAAAAGAATGATGAGCAGCTAAAGGAAGTAGCCTTGCTGGCAAGGAGGTGTGTTAGAGTGAAAGGAGAGGAAAGGCCAACTATGAAGGAAGTAGCAAAGGAACTAGAGGGTCTAATTGCAATGGAAAAACATCCTTGGGTGAATCATGAAGATGTTGTGTCAGAAGAACGCCAGTACTTAGTTGGTCATGTATCTGATAATTATAGGGCAATTGGTACCAGCACTTTTGCTTCATATGATAGCATGTTGAAGGAAATTTCATCTGAAATTGCAGATGGACGATAA 4407 0.4071 MEIELLFFIILIAAADAQSLAGCPNKCGDVDIPYPFGVGVQPGTSRNCFLDKSFNLTCDNSTSTLYFGNALVSNISFRQNQMEISTFVSTACFNQSGPESIHPHRILTDSFTISNTQNKFITFGCDALGIIRFQNHLRDNFTYYSGCVALCDRPPKNMGDQTCTGTGCCQVDIPEGINNISYGVSSVYNHTNVSAFNNCSYAFAAKHDWFSFSLDYLQYFPYDKVPLVLDWTVSNDTCQNASEKADYACKSNSDCVDSTFGAGYNCICKPGFEGNPYHPDGCHDVDECGKSNNCSMPKQCRNFDGTYQCSCPHGYKGDGYINGTGCTLDTHEYSNRRLLVLITALGISVALLVAFTLVSTLCWARKQRTLKQLRQKNFVQNGGNLLLEQFSQHQGYSNQTKIFAEVELKNATNNFDECRILGRGGQGIVYKGLLPDNTLVAIKKSKVGGNPRQIKDFINEVFVLSQVNHRNIVKLLGCCLETDVPLLVYEFVNNGTXLDHIDPLKNEFSIPWETRLRIAAETAEAISYLHSYASIPIIHRDIKSTNILLDHNLRAKVSDFGASKLIPLDETHVTTVVQGTLGYLDPEYLHIGQLNEKSDVYSFGVVLVELLTGKKXIEFSRPEQKNLAMYFVSSMKEDHLLEILDKRVLDRKNANQLKEIALLARRCVRVKGEERPTMKEVAKELEGMIAMKKHVWAMKGDEESMSEESEYLLGHVPNMYRETGAMMMKMGLELLFLVSLLAASEAQSLAGCPNKCGDVEIPYPFGVGIQPGTSRNCFFDQSFNLNCDNSTSTLYFENFPVSNISLQQSQMEISMAVSNGCFNASGKDLSLYTKAFTVSSTQNKFLTVGCDALGVISFEKNFTYYSGCVALCDKPPSREINDKTCSGTGCCQVDIPKGMNNISFFASTVTNHTNVSAFNNCTSAFISKNGWFSFSPDYLGEFPFERAPLVLDWTVSNGTCQTAASSSNNTAEDYACKSNTDCVDSSDGVGYKCKCKPGFEGNPYHPDGCQDVDECSRPNNCSMSRQCHNFDGTYRCSCPPGYKGDGYTNGTGCTLDTPRSNHQLLILIIALGISVALLAVIALISTVCWAHKRRTLKQLRQKNFVQNGGYMLLQQLSQHQGYTEKTEIFTEVELKNATNNFDESRILGRGGQGTVYKGILPDNKIVAIKKSKVGGTPRQIKDFINEVFLLSQINHRNVVKLLGCCLETDIPLLVYEFVDNGTLLDHLDPLKNEFSIPWEVRLRIAAETAGAISYLHSSASIPIIHRDIKSTNILLDHNLKAKVADFGASRLIPLNETHVTTMIQGTFGYLDPEYLHIGQLNDKSDVYSFGVVLVELLTGNKAAEFRWSEEKNLVMYFVFAMRENRLWEILDRRLLDQKNDEQLKEVALLARRCVRVKGEERPTMKEVAKELEGLIAMEKHPWVNHEDVVSEERQYLVGHVSDNYRAIGTSTFASYDSMLKEISSEIADGR 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5258g00056 1470 ProSiteProfiles EGF-like domain profile. 1011 1048 IPR000742 -
Pral5258g00056 1470 CDD EGF_CA 1011 1045 - -
Pral5258g00056 1470 Gene3D Plasmodium vivax P25 domain 228 333 - -
Pral5258g00056 1470 FunFam Wall-associated receptor kinase 2 385 491 - -
Pral5258g00056 1470 SUPERFAMILY EGF/Laminin 1010 1046 - -
Pral5258g00056 1470 FunFam Wall-associated receptor kinase 2 1218 1434 - -
Pral5258g00056 1470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Pral5258g00056 1470 Gene3D Laminin 1015 1055 - -
Pral5258g00056 1470 Pfam Calcium-binding EGF domain 1011 1046 IPR001881 GO:0005509
Pral5258g00056 1470 Pfam Calcium-binding EGF domain 284 316 IPR001881 GO:0005509
Pral5258g00056 1470 SMART serkin_6 415 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00056 1470 SMART serkin_6 1141 1423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00056 1470 Gene3D Transferase(Phosphotransferase) domain 1 1218 1434 - -
Pral5258g00056 1470 Gene3D Transferase(Phosphotransferase) domain 1 493 710 - -
Pral5258g00056 1470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1263 1275 IPR008271 GO:0004672|GO:0006468
Pral5258g00056 1470 SMART egf_5 287 327 IPR000742 -
Pral5258g00056 1470 SMART egf_5 1014 1054 IPR000742 -
Pral5258g00056 1470 SMART egf_5 237 283 IPR000742 -
Pral5258g00056 1470 SMART egf_5 959 1010 IPR000742 -
Pral5258g00056 1470 Pfam Wall-associated receptor kinase galacturonan-binding 752 813 IPR025287 GO:0030247
Pral5258g00056 1470 Pfam Wall-associated receptor kinase galacturonan-binding 23 84 IPR025287 GO:0030247
Pral5258g00056 1470 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 1027 1038 IPR000152 -
Pral5258g00056 1470 CDD STKc_IRAK 421 688 - -
Pral5258g00056 1470 ProSiteProfiles EGF-like domain profile. 967 1010 IPR000742 -
Pral5258g00056 1470 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Pral5258g00056 1470 SUPERFAMILY Protein kinase-like (PK-like) 1123 1418 IPR011009 -
Pral5258g00056 1470 Gene3D Phosphorylase Kinase; domain 1 1093 1217 - -
Pral5258g00056 1470 Gene3D Phosphorylase Kinase; domain 1 387 491 - -
Pral5258g00056 1470 SUPERFAMILY Protein kinase-like (PK-like) 395 686 IPR011009 -
Pral5258g00056 1470 ProSiteProfiles EGF-like domain profile. 284 318 IPR000742 -
Pral5258g00056 1470 Pfam Protein kinase domain 1142 1409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00056 1470 Pfam Protein kinase domain 417 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00056 1470 CDD STKc_IRAK 1147 1414 - -
Pral5258g00056 1470 Gene3D Laminin 966 1014 - -
Pral5258g00056 1470 ProSiteProfiles Protein kinase domain profile. 1141 1423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00056 1470 ProSiteProfiles EGF-like domain profile. 234 283 IPR000742 -
Pral5258g00056 1470 ProSitePatterns Calcium-binding EGF-like domain signature. 284 309 IPR018097 GO:0005509
Pral5258g00056 1470 SMART egfca_6 284 327 IPR001881 GO:0005509
Pral5258g00056 1470 SMART egfca_6 1011 1054 IPR001881 GO:0005509
Pral5258g00056 1470 FunFam Wall-associated receptor kinase 2 492 708 - -
Pral5258g00056 1470 CDD EGF_CA 284 318 - -
Pral5258g00056 1470 ProSitePatterns Calcium-binding EGF-like domain signature. 1011 1036 IPR018097 GO:0005509
Pral5258g00056 1470 FunFam Fibrillin 2 1006 1049 - -
Pral5258g00056 1470 FunFam Fibrillin 2 279 322 - -
Pral5258g00056 1470 SUPERFAMILY EGF/Laminin 284 319 - -
Pral5258g00056 1470 FunFam Wall-associated receptor kinase 2 1111 1217 - -
Pral5258g00056 1470 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 745 1415 IPR045274 GO:0007166
Pral5258g00056 1470 ProSiteProfiles Protein kinase domain profile. 415 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5258g00056 Pral-Chr5258 425449 432300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5258g00056 3 714 Receptor kinase-like Gene Family AT1G21230 44.199 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pral5258g00056 Pkinase 8.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5258g00056 - - qlo:115959581 1381.31