Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5258g00055 ATGATGATGATGAAGCTTCTGTTCTTCAATATCCTATTAGCAGCGGCCTGGGCCGCAGCTGAAGCTCAATCCCTTGCAGGCTGTCCCGACAAATGCCGTGACGTGGACATTCCATATCCATTTGGTGTTGGGGTACAACCTGGTACTTCTCGCAACTGTTTCTTGGATCAATCATTTAATCTCACTTGTGACAACACAACATCCACATTATATTTTGAGAATTACCCAGTTTCCAACATATCCCTCCAACGAAATCAAATGGACATTTCAACGCTGCTCTCTAGGGGTTGTTGCAATCGAACAGGCACGATCCATAATATTTACACCAAAGGCTTCACCATTTCCAGCACCCAAAACAAGTTTCTAACCATCGGATGCGATGCTTTGGGCGTACTTATCTTCCGCAAGAACTTCACTTATTACAGTGGCTGTGTGGCGCTATGTGACAAACCTCCTCCAAAAGGGATGATTGATCAGACTTGTTCAGGAACTGGGTGTTGTCAGGTGGATATTCCGACAGGAATGAATAATATCAGCTTTTATGGAGCTACTGTCGACAACCATACCAAAGTTTGGACCTTCAATAATTGTAGTGCTGCTTTTGTTGCCAAAAGTGATTGGTTTAGTTTCTCCCTCGATTATCTGCAAAAATTTCCCTTGGATAGGGTCCCACTTGTCGTGGATTGGACTGTTTCGAATGTTTCTTGTCAAACTGCTTCCAGTAATGAAGAAGAATATGCTTGCAAATCCAACACAGATTGTGTGGATTCCAGTGATGGAACTGGGTACACGTGCAAATGTAAATCTGGGTTTGAGGGAAATCCATACCACCCGGATGGATGTCACGGCATTAGCGGAGCCTTGTTGGTTGTCATTACACTAATATTCACATTATGTTGGGCACGCAAGCAAAGAACTCTAAAACAGCTGAAGAGAAGAAATTTTGAGCAGAATGGAGGATACATGTTGCTACAACAACTTTCACAACATCAAGGGTATGGTGACAAATTCAAACTATTTACGGAAATTGAGCTTAAGAATGCCACAAACAATTTTGATGAATGTCGAATCCTTGGTCGTGGGGGCCAAGGCATAGTTTATAAAGGCATATTACCAGACGACTCTATTGCTGCCAGTAAGAAATCTAAAGTAGCAGGAAATCTCAGACAAATTAAAGATTTTATCAATGAAGTGTTTGTTCTTTCTCAAATCAAGCATCGAAATGTTGTCAAACTTTTGGGATGTTGTCTCGAAACCGATGTCCCATTGTTAGTATATGAGTTTGTGGACAATGGCACCCTTCTTGACCACATAGATCCATCACATGAGTTTTGTATTAATTGGGAGACTAGAATAAGGATAGCTGCAGAAACTGCTGACGCTATTTCTTATTTACACTCATCTGCTTCCATTCCAATTATTCATCGAGATATTAAATCTACCAACATACTCTTAGATCATGATTTGAGAGCAAAAGTATCTGACTTTGGAGCTTCAAGACTTGTTCCTCTAGATAAAACTCATGTTACTACCATGATACAAGGAACTTTTGGATACTTGGATCCGGAGTATCTTCACATAGGTCAGTTAAATGAAAAGAGTGACATTTACAGTTTTGGAGTTGTACTTGTGGAGCTACTTACAGGAATGAAAGCAGTTGAATTTAGTTGGCCAGAACATAAAAATTTGGCAATGCATTTTGTATCTTCAATGAGAGAAAATCGTTTTTGGGAAATTCTCGACAAACGAGTATCGGACGACCCAAAGAATGCCAAGCAATTGAAGGAAGTAGCTTTATTGGCAATGAGGTGTGTTAGAGTGAAAGGAGAGGAAAGACCCACTATGAAAGAAGTAGCAAAGAAACTAGAGGATCTAATTGCAATGGACAAACGTCATTGGGTGATGAGGGCTGAGGATCTTATGTCAGAAGAAGGTGAACGCTTACTTTGTCATATACCTGTTGTAGATAGGGCAGTTGGTGATGGTACTTTAGCTTGTTATGATAGCATATTGAAGGAGATTGCAACTGAAATTGCAGATGGACGATGA 2049 0.4051 MMMMKLLFFNILLAAAWAAAEAQSLAGCPDKCRDVDIPYPFGVGVQPGTSRNCFLDQSFNLTCDNTTSTLYFENYPVSNISLQRNQMDISTLLSRGCCNRTGTIHNIYTKGFTISSTQNKFLTIGCDALGVLIFRKNFTYYSGCVALCDKPPPKGMIDQTCSGTGCCQVDIPTGMNNISFYGATVDNHTKVWTFNNCSAAFVAKSDWFSFSLDYLQKFPLDRVPLVVDWTVSNVSCQTASSNEEEYACKSNTDCVDSSDGTGYTCKCKSGFEGNPYHPDGCHGISGALLVVITLIFTLCWARKQRTLKQLKRRNFEQNGGYMLLQQLSQHQGYGDKFKLFTEIELKNATNNFDECRILGRGGQGIVYKGILPDDSIAASKKSKVAGNLRQIKDFINEVFVLSQIKHRNVVKLLGCCLETDVPLLVYEFVDNGTLLDHIDPSHEFCINWETRIRIAAETADAISYLHSSASIPIIHRDIKSTNILLDHDLRAKVSDFGASRLVPLDKTHVTTMIQGTFGYLDPEYLHIGQLNEKSDIYSFGVVLVELLTGMKAVEFSWPEHKNLAMHFVSSMRENRFWEILDKRVSDDPKNAKQLKEVALLAMRCVRVKGEERPTMKEVAKKLEDLIAMDKRHWVMRAEDLMSEEGERLLCHIPVVDRAVGDGTLACYDSILKEIATEIADGR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5258g00055 682 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 625 IPR045274 GO:0007166
Pral5258g00055 682 Pfam Protein kinase domain 354 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00055 682 FunFam Wall-associated receptor kinase 2 234 285 - -
Pral5258g00055 682 Pfam Wall-associated receptor kinase galacturonan-binding 28 89 IPR025287 GO:0030247
Pral5258g00055 682 Gene3D Laminin 227 279 - -
Pral5258g00055 682 CDD STKc_IRAK 358 625 - -
Pral5258g00055 682 FunFam Wall-associated receptor kinase 2 429 644 - -
Pral5258g00055 682 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00055 682 SMART serkin_6 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5258g00055 682 Gene3D Phosphorylase Kinase; domain 1 318 428 - -
Pral5258g00055 682 FunFam Wall-associated receptor kinase 2 322 428 - -
Pral5258g00055 682 SUPERFAMILY Protein kinase-like (PK-like) 337 636 IPR011009 -
Pral5258g00055 682 Gene3D Transferase(Phosphotransferase) domain 1 429 643 - -
Pral5258g00055 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5258g00055 Pral-Chr5258 417957 421356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5258g00055 2 682 Receptor kinase-like Gene Family AT1G21250 39.680 2.50e-164 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pral5258g00055 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5258g00055 - - pcin:129293718 802.742