Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5258g00021 ATGGCTCCAGTGAGTACTCTCCCCCCTGGATTTCGGTTCCATCCAACAGATGAAGAACTTGTTTCTTACTACCTAGAAAGAAAAATAACAGGTCGCTCAATAGAGCTCCATATAATCCCTGAAGTTGATCTCTACAAGCATGAACCTTGGGATTTGCCAGACAAGTCATTCTTGCCAAGTAAAGATATGGAGTGGTACTTCTACAGTCCAAGGGATAGAAAGTACCCAAATGGTTCAAGAACTAACAGGGCCACAAGATCTGGTTATTGGAAAGCCACAGGGAAAGATAGGCCAGTGAGCTCTCAAAATCGATCTGTTGGGGTGAAGAAGACGTTGGTGTATTATAGAGGTAGAGCTCCTCATGGCATAAGAACCAATTGGGTCATGCACGAGTATCGCCTCATTGATTCAGAACCAGCAAGTGTTTTCTCATCTTTGAAGGATTCATACTCATTGTGTCGCATCTTCAAGAAGACGATCCAAACCTCGGAATCACCTAAAGAAAAAGACAAAGCTAAGGAAGCAAAGAAGGAATCTGTAGGATCAGCAGAAGAGGAAGATGATACAGTTGCAAATTATCATCATGATCATGCTAATAATAAATTTCCTAATTGTGATGCTTCTTGTTCGGATCTCACTCAAGGAACACATACTGAAACTGGTATGGTAGATGATTTTCAAGCACAATTCACTTGTGATGAAGCAAACAGCGCAGCTAAGATCACGTATTCTCAGCTGGGCATAATGGAGGACCCATCAAATCTGTTTCAGGTGGGCTTCCTTTGA 786 0.4211 MAPVSTLPPGFRFHPTDEELVSYYLERKITGRSIELHIIPEVDLYKHEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRSGYWKATGKDRPVSSQNRSVGVKKTLVYYRGRAPHGIRTNWVMHEYRLIDSEPASVFSSLKDSYSLCRIFKKTIQTSESPKEKDKAKEAKKESVGSAEEEDDTVANYHHDHANNKFPNCDASCSDLTQGTHTETGMVDDFQAQFTCDEANSAAKITYSQLGIMEDPSNLFQVGFL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5258g00021 261 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Pral5258g00021 261 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Pral5258g00021 261 MobiDBLite consensus disorder prediction 163 187 - -
Pral5258g00021 261 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Pral5258g00021 261 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Pral5258g00021 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 207 - -
Pral5258g00021 261 FunFam Nac domain-containing protein 86 16 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5258g00021 Pral-Chr5258 196786 198399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5258g00021 1 169 NAC Transcription Factor Family AT3G17730 72.781 2.34e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5258g00021 NAM 7.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5258g00021 - - gmx:100808325 357.066