Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5258g00019 ATGTTCCCTTCAAAGAAGGCCTCATCTATGAATTCCCAAGAGCGAGGCATGTGTGTTCAACCTGACTCTGGCCTCGTCCTCACCACTGACCCCAAGCCTCGCCTTCGCTGGACCGTCGAACTCCATGAACGCTTCGTCGATGCCGTCACCCAGCTCGGAGGCCCTGATAAGGCAACACCCAAGACGATCATGAGGGTGATGGGTGTGAATGGTCTCACGCTTTACCACTTGAAGAGTCACCTTCAGAAATTTAGGCTTGGAAAGCAGCCACACAAGGACTTCAATGATCATTCGATCAAGGATGGCATGAGAGCGTCTGCTTTAGAACTTCAACGAAATTCTGCCTCCTCTTCCGCCATGATCGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAGCGACGACTTCACGAACAACTAGAGGTTCAGAAACATCTTCAGCTGAGGATTGAAGCTCAAGGGAAATACATGCAGAGCATATTAGAGAAGGCTTATCAAACACTTGCAGGTGAAAATTTGAAGAACATTAATGGAGCTCCTCCTCCTCAGCATCATCAAGCCAATATAATACCTCCTCAAGATCACTTCACTTCCATCCCTCTGAACACTAACTTCCCTCCTTTTCAAGATCAGCTTAACATCTATGGCGGTGGTGGTGACCAGCTTGATCATCTTCATCAGCTCATGCCAAATAGCAGCAACGCTACTGAAAATGTGTGTGGGGTGATGAATAATAACAAGAGGCCTTTGATTTGGAACAGTGAAGATCTAAGGCTTCATCAAGATCTGGGAACTGCCTCTTCGTGTCTTGATACTGATCCTTTTAGGGCAGTGTCACTGGATAGAGCCACCACCAGTTCTGAGATAACATTAATATTGATCCTGCTATTTCGGAGATTTTTGACACCAAGCCTTTGCTTCATCAAGGCACATTCCCTTCAACAACAACGCACTGAAAATCTGTGTGTGGGGATGATGAATAATAACAAGAGGCCTTTGATTTGGAACAGTGAAGATCTAAGGCTTCATCAAGATCTGGGAACTGCCTCTTCGTGTCTTGATACTGATCCTTTTAGGGCAGTGTCACTGGATAGAGCCACCACCAGTTCTGAGAATAACATTAATATTGATCCTGCTATTTCGGAGATTTTTGACACCAAGCCTTTGCTTCATCAAGTAGAGGACACTTTAGGGGATACTACCACTGATCATAATAAGAAGCTTGAAGGGCCATCTTCAAAAAGGGCACATTCCCTTCAACAAGTAGATCAAAGGATGAGTCCTATGATTAGCACTGGTACACCATTTTAG 1311 0.4531 MFPSKKASSMNSQERGMCVQPDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVNGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRASALELQRNSASSSAMIGRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENLKNINGAPPPQHHQANIIPPQDHFTSIPLNTNFPPFQDQLNIYGGGGDQLDHLHQLMPNSSNATENVCGVMNNNKRPLIWNSEDLRLHQDLGTASSCLDTDPFRAVSLDRATTSSEITLILILLFRRFLTPSLCFIKAHSLQQQRTENLCVGMMNNNKRPLIWNSEDLRLHQDLGTASSCLDTDPFRAVSLDRATTSSENNINIDPAISEIFDTKPLLHQVEDTLGDTTTDHNKKLEGPSSKRAHSLQQVDQRMSPMISTGTPF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5258g00019 436 MobiDBLite consensus disorder prediction 397 413 - -
Pral5258g00019 436 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Pral5258g00019 436 Gene3D - 31 89 - -
Pral5258g00019 436 MobiDBLite consensus disorder prediction 414 436 - -
Pral5258g00019 436 MobiDBLite consensus disorder prediction 397 436 - -
Pral5258g00019 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Pral5258g00019 436 FunFam Myb family transcription factor 31 89 - -
Pral5258g00019 436 Pfam MYB-CC type transfactor, LHEQLE motif 128 167 IPR025756 -
Pral5258g00019 436 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Pral5258g00019 436 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 175 IPR044848 GO:0003700
Pral5258g00019 436 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5258g00019 Pral-Chr5258 176816 179379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5258g00019 1 173 G2-like Transcription Factor Family AT1G79430 83.429 6.84e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral5258g00019 Myb_DNA-binding 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5258g00019 - - zju:107424282 365.925