Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00100 ATGGGGTCGTTTCTTCTCTGCGCAATTCTATTGTTTGTAGTTGAGCGAAAGGTTTCTGGCATTACCGAAGGTGAGGCCCTGATTGCATTGAAGAAGAACATGAACGATCCTAACGATGTTCTTAAAAACTGGGATTCTTCCATAGTGAATCCCTGCACCTGGTTTGGTGTTAAATGCAATGGTGAAAGCGTCACTCGTATGGAAATTTATGGGAATAATATCAGAGGAAAAATCCCAAAAGAGCTGGGAAACTTGACAAGCTTGGTGACCTTGGATCTTTACTCGAACAGACTAAGTGGTCCGATTCCAGACACATTAGGCAAACTTAAGAACTTACAATTCCTGCGTCTCAACGATAACAACTTATCAGGAAACATTCCTGTGTCTTTGACTGGTCTTAAATTACTGCAAGTTCTTGATTTCTCGAGCAACGAGTTAAGTGGAGAAATACCAGTTGGCGGTTCATTATTATCATTTTATCCCTCCGGTTTTTCAAATAATCGTGGACTAAGAGCACCGAAGGGACTACCTCTGACGCCAACATCTCTTTCAGGTAACAGTAATACTAGAGCAATTGCAGGAGGAGCTGCTGCTGGCGGTGCACTGTTATTTGTAACACTCGTTATTGTACTCGTATATTGCAGAAGAAGGAGATCACAAGAACATTTCTTTGATGTTGCTGCTGAGGATCCTCCTGATGCAAATGATCATCACCATGGTCAACTTAAGCGGTTTTCTCTGCTTGAACTACTTGTAGCAACAGATAACTTTAGTAGCAGAAACATTCTGGGTGTAGGTGGTTTTGGAAGGGTTTATAAAGGACGCTTGGCTGATGGTTCTCTTGTAGCAGTAAAGAGACTTAAAGAGGAACGAACACATGGCGAAGACGTTCAATTTCAAACAGAAATGGAAATGATCAGCATGGCTGTGCATCGAAACTTGCTTCGCCTTCTTGGATTCTGCTCTACACCCACTGAACGCTTGCTTGTTTATCCTCTCATGGTTAATGGCAGCGTAGCATCATGCTTACGAGGGCGTCCAGAATCACGACCTGCATTAGACTGGTTAACTCGGAAGCGTATAGCAGTAGGGGCTGCAAGGGGACTTGCGTATCTGCATGATCATTGTGAGCCAAAGATTATTCACAGAGATATTAAAGCAGCAAACATATTGCTGGACGAGGAATTTGAAGCAGTTGTGGGGGATTTTGGTTTAGCAAAACTCATGGATTACAAAGCCACTCATGTTACGACTGAAGTAAGAGGGACGATTGGGTATATAGCACCAGAATATCTCTCCACTGGACAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTTATGCTTCTTGAACTAATCACTGGACAGAAAGCTTTTGATCTCGCTCGACTTGCAATAGACAATGATCATATCATGTTGCTTGACTGGGTGAGAGAAGTGGTGAAAGAGAAGAAGTTGGGGACTCTAGTGGATGCTGATTTAAGGGGAATTTGTGACGAACAAGAAGTTGAAGAGGTAGTCAAAGTGTGTTTACTGTGCACACAGAACAACCCTTTGAGAAGGCCAAGGATGTCACAAGTGGTGAGAATGCTGGAAAGTGAGGGTATGCATGAAGACTGGGAACAATGGCAGATGGAGATGTCGTCGCAGCAACATAGTGTTGATTTTAATATGAGCCATCATCAGGTCAATGCTGATGAATGTACTTTAAGCTCAAGTTCATGTATAGTACCAGAAGAACTTTCAGGTCCACGATGA 1761 0.4282 MGSFLLCAILLFVVERKVSGITEGEALIALKKNMNDPNDVLKNWDSSIVNPCTWFGVKCNGESVTRMEIYGNNIRGKIPKELGNLTSLVTLDLYSNRLSGPIPDTLGKLKNLQFLRLNDNNLSGNIPVSLTGLKLLQVLDFSSNELSGEIPVGGSLLSFYPSGFSNNRGLRAPKGLPLTPTSLSGNSNTRAIAGGAAAGGALLFVTLVIVLVYCRRRRSQEHFFDVAAEDPPDANDHHHGQLKRFSLLELLVATDNFSSRNILGVGGFGRVYKGRLADGSLVAVKRLKEERTHGEDVQFQTEMEMISMAVHRNLLRLLGFCSTPTERLLVYPLMVNGSVASCLRGRPESRPALDWLTRKRIAVGAARGLAYLHDHCEPKIIHRDIKAANILLDEEFEAVVGDFGLAKLMDYKATHVTTEVRGTIGYIAPEYLSTGQSSEKTDVFGYGVMLLELITGQKAFDLARLAIDNDHIMLLDWVREVVKEKKLGTLVDADLRGICDEQEVEEVVKVCLLCTQNNPLRRPRMSQVVRMLESEGMHEDWEQWQMEMSSQQHSVDFNMSHHQVNADECTLSSSSCIVPEELSGPR 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00100 586 ProSiteProfiles Protein kinase domain profile. 257 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5255g00100 586 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Pral5255g00100 586 FunFam Somatic embryogenesis receptor-like kinase 1 334 552 - -
Pral5255g00100 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Pral5255g00100 586 SUPERFAMILY L domain-like 23 186 - -
Pral5255g00100 586 FunFam Somatic embryogenesis receptor kinase 1 223 333 - -
Pral5255g00100 586 Gene3D Ribonuclease Inhibitor 20 175 IPR032675 -
Pral5255g00100 586 FunFam Leucine-rich repeat receptor-like protein kinase 21 159 - -
Pral5255g00100 586 Gene3D Transferase(Phosphotransferase) domain 1 334 552 - -
Pral5255g00100 586 Gene3D Phosphorylase Kinase; domain 1 225 332 - -
Pral5255g00100 586 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 542 - -
Pral5255g00100 586 Pfam Protein kinase domain 259 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5255g00100 586 SMART serkin_6 257 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5255g00100 586 SUPERFAMILY Protein kinase-like (PK-like) 239 533 IPR011009 -
Pral5255g00100 586 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00100 Pral-Chr5255 631331 634538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00100 4 586 Receptor kinase-like Gene Family AT4G33430 57.943 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pral5255g00100 Pkinase 4.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00100 K13416 - sind:105172594 743.421