Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00059 ATGGATCCCAATGGTTATGTGGATGATAAAAGTGAAAGCAGATTGTATATCGGGAACCTTGATCTTAGAATAACAGAAGCAGCTCTTATAAAGATGTTTTCTCCATATGGGAAGATTGTATCTGAGGATTTCTTATGGCACACTCGCGGCCCCAAGCGTGGGGAGCCCCGTGGCTTTGCTTTTATCCAGTATAGCTCAAGAGAGGAAGCAGAACTGGCCAAGGAGAAAATGCATGGGAAGTTAGCTTGTGGCCGGCCACTGGTTGTTCGGCTTGCGAGTGAGAAGTGCCTGTTAGAAACAGCCAATAACTCATCAAAAGTCACGGGAGAAGGGCACAAGATACACCTTACCGGTAATGGCATGGGACAGACAAGTCGCAGTGCAAAAATAGCTGCAATAAAGAACAAATTGAAATCAATAGAGGAGGAGAGCTCTAGGCCAAAGAAGCAGAAGCTAACTGATGATGTATCTTGA 474 0.4515 MDPNGYVDDKSESRLYIGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYSSREEAELAKEKMHGKLACGRPLVVRLASEKCLLETANNSSKVTGEGHKIHLTGNGMGQTSRSAKIAAIKNKLKSIEEESSRPKKQKLTDDVS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00059 157 CDD RRM_RBM18 14 93 IPR039157 -
Pral5255g00059 157 MobiDBLite consensus disorder prediction 138 157 - -
Pral5255g00059 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Pral5255g00059 157 Gene3D - 10 103 IPR012677 -
Pral5255g00059 157 MobiDBLite consensus disorder prediction 107 126 - -
Pral5255g00059 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 51 149 - -
Pral5255g00059 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Pral5255g00059 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Pral5255g00059 157 SUPERFAMILY RNA-binding domain, RBD 5 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00059 Pral-Chr5255 396611 398560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00059 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 40.964 1.64e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00059 K24527 - gmx:100806572 261.536