Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00039 ATGCCAGTTGAAAAAAACAAGGTTTTTGGTACTCCAGATGTCATGAAAGCAGAGGATGGAAATGACTCCTTAGATACCATCATCAGAAAGGCAATTGGCAGAGAACCTTTTCTTTCTTTTCCAAGGGCTAGTGACAGTCCAGTCCAGTGGATGCAATTACTTCATGCGTTAGATCAGCAAGAATTGCCAGGCTGGCCTCTGCTCTCTCCTCTGAAGGTTCAGTTGCTGAAGTGTGAAAAGTGTTCCCGAGAATTCTGTTCTTCAATTAATTACAGAAGGCATATACGTGTTCACCATCGGTTGAAAAATATTGATAAGGATTCTACAAAAAATAGAGATCTGTTAGGGGCATATTGGGATAAGTTATCTGTAGAAGAGGCAAAACAAGTTGTATCATTCAAGAATGTGACGCTGGAGGAAGTTCCGGGGTCTTCTATTTTGAAAGCACTGACGACTCATGTTCGGAAACAAGGAATTCCTTCACTTCCACAGAATTATCTGAAGGCTGGTTCTGCCCTTTTGGATATTGTTCAAGCTAGATCTTCCGTACTTTCTATATCTTCTAAGGAGTTGTTCGGCATCCTTGATAGTGCCAGTGAAAAAACATTTTTATGCGGGCCAGCAGTGTCAATGCAAAGATATATTTTTGATGGAGAACCGGGAAAGATTGGCCTTGAACTGAAAAACCTAGTTGCTTGTACTAGTTTCTTGCTAGAACAGAAATTGGTAAAGGCATGGCTTGCTGACAAGGAAGCTGAAGCATTAAGATGCCAGAAACTGCTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGAAAACGCCAGAAAAAACTTAGGCAAAAAGAACAAAAGGCTAGGGAAAAGCTTGAGGATGAGGCTGAAATGAAAAAGAGTGGCAGCAGCACAGCAGCTGACAGTTCATTAGCAGAAGCATTTTCAGATACATCTGACTCTGAAGAACATAGTCCAGATGCATTTGCCGGCCATGGTCCTTCACTACTTGTTCCCTCCCATTGCACAAACATTAATGAAGGTGTGGATGGGGGTTCTTTGTTAGTGTATGATTGTGGCACTGATCAGAACATTGAGCAAGAGACATCCCTAGGACATGTTTGTCAACATGTGGTTGCTCAACCAAAATCACAATGGGTTGTAGCCAATGGTTTTCATGCAAATCATAACTCTCAAATTTTCAAGCCTGGAGTCATTCAGAAGTATGGGAGCCATTGTAATCAAAAGGCTGCTCCCATGCTTAATGGCAACAAAGTATGGAGCAGAAAGCCTAAGCAAAAAATTATTGGGGTACATTCAAAAGCCGGACTAGAGAAAGAACCAGATGAGGGTAAAAACCATGAAGTTTTAATAGGGTCTATATCTGTTACTTTGGGAAATTGCAGCCAATCAGAGGATAATCTAGTGGCATCTGGAGAGGACTGCATGGTAGGAAAGTCAAACCATCGTATTAACACTCAGGAGAAGCCAGTCAAACCTGATTCTGTACAGATTGTTAACAATCGTTTAATAGTTAAGGCAGTTAAGCTTTGGAGGCCAGTTACTCAGCATGGAAGTAAATATCCATTACCACTTCACCGTGGTCCAGAACCTGATGCAATAGACGGAAAAATGGATGATCAAAATTCTTTAAGGCTGTGTGACTTAGGTAATAGCGATAATAGTGTTGAGAATAATTCCTCTCATCTAGAGGACCAAGTGGGTACAGGAAACTTGCAGTTTTCTAGTCAAGCTGCCAAAGCCTTTCTTGCAGAAAGATGGAAAAAAGCTATCTCGTCAAACCATGTGAAATTGGTTCTTTCTCCTGATTCTAAACTTCCTAGGTGTATGGAGGCACAAGATTGTGAACTAGTTGCATGCCAATCTTCAGATATTGACAAATGCTCCATTTTTGCAAGTGCAGAGCCTCGGCTGCCTGCAACCTTGTCTAAATCCAGAATCAGAATGAAGCCTGAAAAGGGTGTCAAGATAAAGTACATTCCTAAACAAAGAACAGCTACTTAA 2034 0.414 MPVEKNKVFGTPDVMKAEDGNDSLDTIIRKAIGREPFLSFPRASDSPVQWMQLLHALDQQELPGWPLLSPLKVQLLKCEKCSREFCSSINYRRHIRVHHRLKNIDKDSTKNRDLLGAYWDKLSVEEAKQVVSFKNVTLEEVPGSSILKALTTHVRKQGIPSLPQNYLKAGSALLDIVQARSSVLSISSKELFGILDSASEKTFLCGPAVSMQRYIFDGEPGKIGLELKNLVACTSFLLEQKLVKAWLADKEAEALRCQKLLVEEEEAAQKRQAEILERKRQKKLRQKEQKAREKLEDEAEMKKSGSSTAADSSLAEAFSDTSDSEEHSPDAFAGHGPSLLVPSHCTNINEGVDGGSLLVYDCGTDQNIEQETSLGHVCQHVVAQPKSQWVVANGFHANHNSQIFKPGVIQKYGSHCNQKAAPMLNGNKVWSRKPKQKIIGVHSKAGLEKEPDEGKNHEVLIGSISVTLGNCSQSEDNLVASGEDCMVGKSNHRINTQEKPVKPDSVQIVNNRLIVKAVKLWRPVTQHGSKYPLPLHRGPEPDAIDGKMDDQNSLRLCDLGNSDNSVENNSSHLEDQVGTGNLQFSSQAAKAFLAERWKKAISSNHVKLVLSPDSKLPRCMEAQDCELVACQSSDIDKCSIFASAEPRLPATLSKSRIRMKPEKGVKIKYIPKQRTAT 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00039 677 MobiDBLite consensus disorder prediction 305 319 - -
Pral5255g00039 677 MobiDBLite consensus disorder prediction 278 304 - -
Pral5255g00039 677 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Pral5255g00039 677 Coils Coil 266 301 - -
Pral5255g00039 677 MobiDBLite consensus disorder prediction 278 335 - -
Pral5255g00039 677 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Pral5255g00039 677 SMART c2h2final6 76 98 IPR013087 -
Pral5255g00039 677 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00039 Pral-Chr5255 248348 253962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00039 18 674 C2H2 Transcription Factor Family AT4G25610 43.008 3.85e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5255g00039 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00039 - - gmx:100799153 798.119