Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00030 ATGTCAGATTCCGAGGACGAAAAATCCGAACATACTCCCCAATCAAAGCCCACCGCGGAGGAACCTGGGTCTGTAATGGATTTCGACCTCGACCTCGAGAGTTCTTGGCCTTTAGATCAGATAGCTTTCGCCTCTAACCCTATGTCCCCGTTTCTGATTTCCGCCACATCGGAGCAACCTTGTTCTCCTCTCTGGCTTTTCTCAGACGTGGACGACGATAGGCAAGCTAAAGTTGCCGCGTCATCCCTCTCCGATGTCCATCGATTGCTCTCCTGCAATTCGAATTCAGTGGCTGAAAAACCAGCGGAGAATGAGGAGACTGAAAAAACCCGTTCGCGCTTTGTTGCCCTGCCACCAATGCCATTAGAAACCCCAGATGGGTATTGTTTGATTAAAGAAAGGATGACACAAGCATTAAGGTACTTCAAAGAGTTGGCTGACCAGAATGTGCTGGCTCAGGTTTGGGCACCTGTAAGGATGGGGAACCAGTATGTCCTTACAACTTCAGGGCAACCTTTTGTTCTTGATCCACATAGTAATGGACTCTATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCAGTAAATGGGGAGAATAATGGAATCCTGGGGCTTCCTGGTCGTGTTTTTCATCAGAAGTTGCCAGAATGGTCTCCCAATGTTCAATATTACTCTAACAAAGAGTATCCCCGCCGAAATCATGCTCAAAATTACAACGTTCGAGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAGGGCAGTCATGTATTGGTGTGCTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCCCCTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCAGAAATTTTGGAACATCCATTCACCCAGATTTGTAATGAAAGCCGTCAGAATGCATTAGCAGAGATCTTGGAGATATTGACGGTGGTCTGTGAAGCTCATAAATTACCTCTGGCCCAAACATGGGTTCCTTGTAGGCATCGGAGTGTTCTGGCTAATGGTGGTGGCCTGAAGAAGAGCTGCTGCAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACTACTGATGTTGCATTCTATGTCATTGATGCTCATATGTGGGGCTTCCATGAAGCCTGTGCTGAGCATCACTTACAACAAGGTCAAGGAGTTGCTGGGAAGGCATTTTTGTCTGGCAATATGTGCTTCTGTGGAAACATTACCCAGTTCTGCAAAACTGAGTACCCTTTGGTACATTATGCTCTCATGTTTGGCTTAACCAGCTGTTTCGCTGTCTGTTTGCAAAGCTCTCATACCGGACATGATGATTATATATTGGAATTTTTTCTGCCTCCTAAGGTCACAGACTTCAACGAACAAATGACCATGTTGGGATCTATAGTAGCAACAATGAAACAGCATTTCCATAGTCTTAAGATAGCTGCTGGTCTTGAGCTCGAGGAGGAATGTTCAGTTGAAATCATTGAAGCAACGAGTGAAAGAGTTTATTCAAGACTCGAATGTATTATGATTGCCCAACCTACTAAATTGCCACATGGGCCTGATGCCTTGCCAAATATGAGGGAGATTTTACCGCTGGATACATCAGAGCAGCAAATGGTATTCTTAGATGATCAAAATGGTGGAGGGAGTCTTGGTGATAGAGCTGGTGGAATCTCTGATCAGATACCCCCCTTGGAGACTAAAAACATAAAGAAACCCTCAGAGAGAAAACGGGGAAAAACTGAGAAATCAATCAGTCTTGAAGTTTTGCAAAACTATTTCGCTGGGAGCCTTAAAGATGCTGCAAAGAGTCTTGGTGTTTGCCCCACGACAATGAAGCGCATATGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGGAAGATTAACAAGGTTAATCGTTCCCTGTCCAAGCTTAAGCGGGTCATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTAAATTCCCTCAGCACCAGTCCACTTCCTACGGCTGTTGGTTCCTTTCCTGAGCCTTCAAACAAGTTCGGCCAACAAGCCTCGCTAAGCGTTCAACTGGGAGAACCACAGATGAAAGAGAGCGAGTTGGATGCCTCCAAAGTATCAGAAACGAACACACAAACTGAGGTAGAACATCAGTTGGTAGGAGGAAGGGTGCGAAGTCCTGAAACTCACGAGAAAAGTGGGTCCAGTCAGGAGTTTGGTAAAGGCCCTGGAGGACCTAGAACGGGGAGTGCCTCAAGTGAAGATAGGGCAAACCCAACTTCTCATGGCTCGTGCCAGGGTAGTCCCCCAATCGAAAGTTCACCTCCAAAAGATATATTCATTACAACCAATACTGATCAGTGTGTTGTGGCTGGGGGATTGCCGGATTTGCAGCCAACAAGTAAACTGAATGGCCCGCCTGGGTATGCCATGCCCAACCTTGTGCCCACAGAACTTCAGGAGTCATTTGGAGGAATGCTGATAGAGGATGCAGGTAGTTCCAAGGACTTGAGAAATTTGTGTCCTGCAGAAGCAGATGCCAATGTGGAGGATCAGTTGCCAGAAGCTTGTGCTGCTAATCCTCCAGGCTCTGACTTGGGTCCTAAGCAATGCACCAATACACTTGGTGACACGATGACGCTTTTCGCAGCTCGGAGAGAAATGAAGACTGTGACTATAAAAGCAACATACAGAGAAGATATCATCCGGTTTCGTATCTCCTCAACATCAGGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGACTGAAACTAGAGGTGGGTACTTTTGATATCAAGTACCTTGATGATGATCAAGAATGGGTTTTGATAGTATGTGATGCAGACCTTCAGGAGTGCATGGATATCTCTAGATCTTCCGGTACTAACATAATCAGGCTTTTGGTACATGATATAACTTCCAATCTCGGAAGTTCCTGTGAGAGTTCCGGGGAGTGA 2964 0.4568 MSDSEDEKSEHTPQSKPTAEEPGSVMDFDLDLESSWPLDQIAFASNPMSPFLISATSEQPCSPLWLFSDVDDDRQAKVAASSLSDVHRLLSCNSNSVAEKPAENEETEKTRSRFVALPPMPLETPDGYCLIKERMTQALRYFKELADQNVLAQVWAPVRMGNQYVLTTSGQPFVLDPHSNGLYQYRTVSLMYMFSVNGENNGILGLPGRVFHQKLPEWSPNVQYYSNKEYPRRNHAQNYNVRGTLALPVFEPSGQSCIGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPFTQICNESRQNALAEILEILTVVCEAHKLPLAQTWVPCRHRSVLANGGGLKKSCCSFDGSCMGQVCMSTTDVAFYVIDAHMWGFHEACAEHHLQQGQGVAGKAFLSGNMCFCGNITQFCKTEYPLVHYALMFGLTSCFAVCLQSSHTGHDDYILEFFLPPKVTDFNEQMTMLGSIVATMKQHFHSLKIAAGLELEEECSVEIIEATSERVYSRLECIMIAQPTKLPHGPDALPNMREILPLDTSEQQMVFLDDQNGGGSLGDRAGGISDQIPPLETKNIKKPSERKRGKTEKSISLEVLQNYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPTAVGSFPEPSNKFGQQASLSVQLGEPQMKESELDASKVSETNTQTEVEHQLVGGRVRSPETHEKSGSSQEFGKGPGGPRTGSASSEDRANPTSHGSCQGSPPIESSPPKDIFITTNTDQCVVAGGLPDLQPTSKLNGPPGYAMPNLVPTELQESFGGMLIEDAGSSKDLRNLCPAEADANVEDQLPEACAANPPGSDLGPKQCTNTLGDTMTLFAARREMKTVTIKATYREDIIRFRISSTSGIVELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIVCDADLQECMDISRSSGTNIIRLLVHDITSNLGSSCESSGE 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00030 987 SMART PB1_new 892 974 IPR000270 GO:0005515
Pral5255g00030 987 SUPERFAMILY CAD & PB1 domains 889 977 - -
Pral5255g00030 987 MobiDBLite consensus disorder prediction 1 15 - -
Pral5255g00030 987 Gene3D - 889 973 - -
Pral5255g00030 987 ProSiteProfiles PB1 domain profile. 892 974 IPR000270 GO:0005515
Pral5255g00030 987 MobiDBLite consensus disorder prediction 753 781 - -
Pral5255g00030 987 FunFam RWP-RK domain-containing protein 889 973 - -
Pral5255g00030 987 CDD PB1_NLP 893 973 IPR034891 -
Pral5255g00030 987 Pfam PB1 domain 892 973 IPR000270 GO:0005515
Pral5255g00030 987 PANTHER PROTEIN NLP8 57 986 IPR045012 GO:0003700
Pral5255g00030 987 MobiDBLite consensus disorder prediction 723 737 - -
Pral5255g00030 987 Pfam RWP-RK domain 590 638 IPR003035 -
Pral5255g00030 987 MobiDBLite consensus disorder prediction 1 30 - -
Pral5255g00030 987 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Pral5255g00030 987 MobiDBLite consensus disorder prediction 693 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00030 Pral-Chr5255 218350 222921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00030 265 987 NLP Transcription Factor Family AT4G24020 54.434 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pral5255g00030 PB1 4.2e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00030 - - gmx:100786118 1429.46