Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00006 ATGTTTCCTTCACAACGAGGCAATGAGATGGTTATCGAATTTTCTAGCCGTCCCCACCACCATCAGCAGCAGCAGAAAATCTCAGAGGATCTCATTGTGGACGGCCATGCTCATGCTTCTCTGGATATGATCAATTTTTCGGATAAAAAATTACAAGCTGGTACTGGCAAGCCGAAGAAGCTACTTTATGAGTCTTCTCAGGATAAGATTAGCCACTATCGAAATTCTGATGACGAATACAAGAAGAAGAACGAAAAGCTCATTCACAGGGAGATTGAGAGGCAAAGAAGGCAAGAAATGGCCACCCTCTATGCATCCCTTAGATCTCTTCTCCCACTCGAGTTCATCAAGGGAAAGCGTTCGATATCAGATCACATGAATGAGGCCAAGAACTACATAAAGCACCTGCAAAAGAATATCAAAGAACTGAGTGCCAAGAGAGACGAACTGAAGAAAATATCGGAGAATTCTTCGAATCCAGAAACACACGAGTGCGAAAATTACACATATAGCGGCTTTTTCAGCGTTCACGAGATTAATAACAATGTTTGTGTCGGAATAGAAGTTTCTAGTTCCTTCGGAGACGAAAGGTTTTCCCTTTCAAAATTGCTTAAACTGATGCTTGACGAAGGACTTGGAGTTGTTAACTGTGTTACCAGCCAAGTCAACGGAAGATTAATTTACAGTGTTCAGTGTGAGGTTATTAGCAGTTCCGACCGTGTAGACCTGCCTGCGCTGAGAAGGAAAATTGTCAATCTAGTCCCATCGTTTAAATGTTCTGATTAA 786 0.4198 MFPSQRGNEMVIEFSSRPHHHQQQQKISEDLIVDGHAHASLDMINFSDKKLQAGTGKPKKLLYESSQDKISHYRNSDDEYKKKNEKLIHREIERQRRQEMATLYASLRSLLPLEFIKGKRSISDHMNEAKNYIKHLQKNIKELSAKRDELKKISENSSNPETHECENYTYSGFFSVHEINNNVCVGIEVSSSFGDERFSLSKLLKLMLDEGLGVVNCVTSQVNGRLIYSVQCEVISSSDRVDLPALRRKIVNLVPSFKCSD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00006 261 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 71 253 - -
Pral5255g00006 261 CDD bHLH_AtORG2_like 85 161 - -
Pral5255g00006 261 SMART finulus 90 142 IPR011598 GO:0046983
Pral5255g00006 261 Pfam Helix-loop-helix DNA-binding domain 88 137 IPR011598 GO:0046983
Pral5255g00006 261 Gene3D - 74 167 IPR036638 GO:0046983
Pral5255g00006 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 136 IPR011598 GO:0046983
Pral5255g00006 261 Coils Coil 126 156 - -
Pral5255g00006 261 FunFam Transcription factor bHLH126 75 164 - -
Pral5255g00006 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00006 Pral-Chr5255 35738 37363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00006 85 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.328 1.70e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5255g00006 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00006 - - gmx:100780888 252.677