Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00005 ATGGGAGATCTTGGTTGGCCACCTTTTGTCCCATTATGGGTGAACCCTAACGATCATATCTCCCTTTGCTCTGCACTGAGAATCAAGAAGATCAACATGAAACCAAATTCCCAGAAGATCGATCTGATGTTTCACAAGAACAAACAGCCAAAGAATAGGCGGCAGAACCCACCTGGCCTGCAAGAAGATTACGATGATATTCAAAAGAAGCTCATCCGAAGGTACATGGAAAGACAAAGGAGGCAAGAAATGGCCGATCTTTCGGCTTCCATGAGATCCTTACTCCCTCTCGAGTACATCAAGGGGAAGCGATCGGTATCAGATCACTTAAATGAGGCTGCCAAGTACATCAAACACCTACAAAAGAGGATCGAGGAACTGAGTGGTGAGAGGGACAAGCTAAGGATGATGTGCAATTTGAATGTTGATGACCCTAAGATTACAACCTTAAGCAAAGCTACAGCTCAAGACCCACCAACAAATGTTATTTCTGTTACTCGAAGTTTGGCTGGCGTTGAGGTTTTTCTCAGCACAGCACAAATGTTGCCTCTGTCAAAACTATTGGATTTACTACTCAAAGAGGGGTTGAGTGTTGTTCATTGTGCTCATACAAAAGTAGAAGAAAGGCAGATCTATACCATCCACGCGGAGGTTTCTGATTTAATTGGGATCAAACCCTCTGCATTACAAAGAAAACTAGCAGAATCCATTCCGTCTTCAAGTCACTCTTCTCTCCAAATGTTAAACCTCCTTCATTTTGTGTATATTTGA 771 0.428 MGDLGWPPFVPLWVNPNDHISLCSALRIKKINMKPNSQKIDLMFHKNKQPKNRRQNPPGLQEDYDDIQKKLIRRYMERQRRQEMADLSASMRSLLPLEYIKGKRSVSDHLNEAAKYIKHLQKRIEELSGERDKLRMMCNLNVDDPKITTLSKATAQDPPTNVISVTRSLAGVEVFLSTAQMLPLSKLLDLLLKEGLSVVHCAHTKVEERQIYTIHAEVSDLIGIKPSALQRKLAESIPSSSHSSLQMLNLLHFVYI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00005 256 Coils Coil 110 137 - -
Pral5255g00005 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 139 IPR036638 GO:0046983
Pral5255g00005 256 CDD bHLH_AtORG2_like 69 135 - -
Pral5255g00005 256 Gene3D - 61 148 IPR036638 GO:0046983
Pral5255g00005 256 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 52 236 - -
Pral5255g00005 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Pral5255g00005 256 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00005 Pral-Chr5255 27825 29452 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00005 47 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51790 40.782 9.81e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5255g00005 HLH 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00005 - - twl:119983771 147.132