Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00004 ATGAGCAGAGGGAAGAAGCATATCACACTGCCTTCTTCAGACAATAATTATGGAGAGGCAAGTGTTTGTGATGATAAGAAGAAGATCATTCGTAGGGAAACTGAAAGGAAAAGAAGGCTGGAAATGACCTCCCTTTGTGAATCACTACGATCGCTGCTACCTTTTGAGCTCATCCAGGGAAAGCGTTCAGTGTCTGATCACATCGGGGAGGCTGCAAATTATATTAAAAGTTTGCAGGAGAAAACCCAAGAACTCCAAATTAAGAGAGATAAGCTCAAACAAAAGGCTAATCCAAGTTTGCTTGGTGCGGAAATAGACGAAAGTTCAAGTAGCCATGCAAATATGGTTAAGTATGTCAACATTTCGCCTTCTCCAGCTGGCGTGGAAATTTCTGTAGACAGTGGCTTGGAGGAAAGCAGCTTTCCACTATCACTCTTGCTGGAAATATTGATGCAAGAAGGATGTAATGTTGTGAGCTGTGTGACCACCCCAGTGAATGGGAGGCTATACCACTCTATTAAATCTGAGGTGGATAACTTGGAAAGCCTTGATATAGCTGGTCTGGAAAAGAAACTGAATGGCGCAATCTTCTGGTCGAGGTATAACTAG 609 0.4286 MSRGKKHITLPSSDNNYGEASVCDDKKKIIRRETERKRRLEMTSLCESLRSLLPFELIQGKRSVSDHIGEAANYIKSLQEKTQELQIKRDKLKQKANPSLLGAEIDESSSSHANMVKYVNISPSPAGVEISVDSGLEESSFPLSLLLEILMQEGCNVVSCVTTPVNGRLYHSIKSEVDNLESLDIAGLEKKLNGAIFWSRYN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00004 202 Coils Coil 75 95 - -
Pral5255g00004 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 78 IPR011598 GO:0046983
Pral5255g00004 202 Pfam Helix-loop-helix DNA-binding domain 31 79 IPR011598 GO:0046983
Pral5255g00004 202 CDD bHLH_AtORG2_like 27 94 - -
Pral5255g00004 202 Gene3D - 20 104 IPR036638 GO:0046983
Pral5255g00004 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 98 IPR036638 GO:0046983
Pral5255g00004 202 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 21 181 - -
Pral5255g00004 202 SMART finulus 32 84 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00004 Pral-Chr5255 24361 25241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00004 24 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 39.306 1.89e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5255g00004 HLH 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00004 - - ccaj:109790384 185.267