Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5255g00003 ATGATGAACCCCTTGCATCCATTTGGCGATGAAGATTTGTTCTTCCAAATTTCATTTCTGAATCGTTCTCCTCCCTCAATCCAAACAATCCCAGAACATGAGATCTTTCACGATCCTGCAGAAGTGAAGCATCACGAAAGCTTTCCACCTAATTTTGGAAGTGAAGTAATACCAAAGGGGAAAGGCAAGCAGAAGCAAAAGGAATTTTCTGTTAAAATTGCTGAAGATGCTAACAAGAAATGGATGCATAGAGAGACAGAAAGACAAAGGAGACAAGAAATGGCCACGCTTTGTGCCTCCCTCAGATCGGCTTTGCCGCTCGAATATATCAGGGGAAAGCGATCCGCATCAGATCACATTGATGGCGCTGTGAAATATATCAAACACCAAAAGAACAAGGTGAAGCAATTGAAGGAAAAGAGGGATGAGTTAATGAAAAATGGACACGGAATCTCAGTTATTGTTCATCCTTACAAGGGTGGAGTTGAGATTATGTGCAGTTATAGCTTCAGAGAGTACGTATTTGCGCAGTCAACGCTCTTGAGTATTTTGATTAAAGAAGGGCTTAATGTGGTGAGCTGCACTTCCATCAAAAGGGATGAGATGTTCATTCTCACCATTCGATTAGAGGAGTCTGATATCTCTGAGAGTACTACGGATTATTCTGAACTGCAAAGAAAGCTGACTGCAGTAATATTATCTACACAATACAGAAAGACTGCATCCGAACCAGTAAACTGCTGA 744 0.4126 MMNPLHPFGDEDLFFQISFLNRSPPSIQTIPEHEIFHDPAEVKHHESFPPNFGSEVIPKGKGKQKQKEFSVKIAEDANKKWMHRETERQRRQEMATLCASLRSALPLEYIRGKRSASDHIDGAVKYIKHQKNKVKQLKEKRDELMKNGHGISVIVHPYKGGVEIMCSYSFREYVFAQSTLLSILIKEGLNVVSCTSIKRDEMFILTIRLEESDISESTTDYSELQRKLTAVILSTQYRKTASEPVNC 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5255g00003 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 157 IPR036638 GO:0046983
Pral5255g00003 247 Coils Coil 127 147 - -
Pral5255g00003 247 Gene3D - 70 154 IPR036638 GO:0046983
Pral5255g00003 247 FunFam Transcription factor bHLH126 71 155 - -
Pral5255g00003 247 CDD bHLH_AtORG2_like 79 146 - -
Pral5255g00003 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Pral5255g00003 247 Pfam Helix-loop-helix DNA-binding domain 80 129 IPR011598 GO:0046983
Pral5255g00003 247 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 70 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5255g00003 Pral-Chr5255 18340 19945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5255g00003 83 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 37.853 1.34e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5255g00003 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5255g00003 - - pcin:129292108 408.297