Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5252g00001 ATGCAAAGCTTGTCAATCCTCAACCTCTCCTACAATAATTTGGAGGGGCCAATACAAGATAGTGGGATTTTCAGTTCTTCCAATCTAGTAGATTTGAGTCACAACAAAAACTTATGTGGGAGGATCCAAGGTCTGCAACCATGCAATGTGAAGGTTATAAAACCAGTTAGAGGAAGTAACAAAAGGAAAGTTGTGATAATTGTTACTACTTCTATAACTGCACTGATTGTTTTGTTTGTGCTACTTTTGATTTATGTCATTCTAAGTAAGAGAAACTCTAGATCTTTAGAACAAAAAGCTAGAGTCAATAGGGAAAATCCATTCTCAATATGGCGCTTCGATGGCAAAATCATGTATGATAACATAATTGAAGCAACTGAGAACTTTCATGAGAAATACTGCATAGGTGCAGGGGCATTTGGAAAAGTCTACAAGTTGACATTGCCAGGGGAGGATAAAGTATTTGCTATAAAAAAGTTTGTATGTGAGGAAAATAGCTTAGACATTAAGAATATAAAAGCTTTTGAGAATGAGATCAAAGCCATGATCAAAACTCGCCACCGAAACATTGTGAAGTTGTATGGATTCTGCTCACAAAGATTGCACACATTTCTAATTTATGAGCACATCAAAAGAGGGAGCTTATTTGATATGCTTAGAAACGATAAAGAAGCATTAGAGTTGGGTTGGTCACAGAGGGCTCATATTATCAAGGGGTTAGCAGAGGCCTTATCATATATACATCATGATTGTAATCCAGCCATTGTTCACAGAGACATATCAAGCAAGAATGTTTTATTATCTTCAAACTTCGAAGTCCATCTCTCAGACTTTGGCACAGCAAGGTTCTTGAAAATCTATTCATCAATTTGGACCACTTTTGCTGGCACATACGGTTATGCTGCTCCAGAGCTTGCGTACACAATGGCAGTGACTGAGAAAGTTGATGTGTATAGCTTTGGTGTTTTGGCCATTGAGTTGCTAATGGGAGAGCATCCTGGTGATTTTATATCATGTATTCAGATGTGTGGGAATGGCCATATCATCTTGGAAGATATTTTGGACCCTCGTTTATCATCAATGAAGCACCAAAACTCTAACAAATTGGCTTTGATTTGGCAAATAGCTCTTTCCTGCATACAAACCAACCCTCAATCTCGACCGACCATGAGAACCATTGCCAACATGATTGAAACAGAGACTTTTCATTAG 1212 0.3795 MQSLSILNLSYNNLEGPIQDSGIFSSSNLVDLSHNKNLCGRIQGLQPCNVKVIKPVRGSNKRKVVIIVTTSITALIVLFVLLLIYVILSKRNSRSLEQKARVNRENPFSIWRFDGKIMYDNIIEATENFHEKYCIGAGAFGKVYKLTLPGEDKVFAIKKFVCEENSLDIKNIKAFENEIKAMIKTRHRNIVKLYGFCSQRLHTFLIYEHIKRGSLFDMLRNDKEALELGWSQRAHIIKGLAEALSYIHHDCNPAIVHRDISSKNVLLSSNFEVHLSDFGTARFLKIYSSIWTTFAGTYGYAAPELAYTMAVTEKVDVYSFGVLAIELLMGEHPGDFISCIQMCGNGHIILEDILDPRLSSMKHQNSNKLALIWQIALSCIQTNPQSRPTMRTIANMIETETFH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5252g00001 403 Pfam Protein kinase domain 130 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5252g00001 403 FunFam MDIS1-interacting receptor like kinase 2 210 403 - -
Pral5252g00001 403 ProSitePatterns Tyrosine protein kinases specific active-site signature. 255 267 IPR008266 GO:0004672|GO:0006468
Pral5252g00001 403 Gene3D Transferase(Phosphotransferase) domain 1 210 402 - -
Pral5252g00001 403 ProSitePatterns Protein kinases ATP-binding region signature. 135 159 IPR017441 GO:0005524
Pral5252g00001 403 ProSiteProfiles Protein kinase domain profile. 129 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5252g00001 403 FunFam Leucine-rich repeat receptor protein kinase MSP1 91 209 - -
Pral5252g00001 403 PIRSF TyrPK_CSF1-R 132 248 - -
Pral5252g00001 403 PIRSF TyrPK_CSF1-R 34 96 - -
Pral5252g00001 403 PIRSF TyrPK_CSF1-R 251 401 - -
Pral5252g00001 403 SUPERFAMILY Protein kinase-like (PK-like) 108 397 IPR011009 -
Pral5252g00001 403 Gene3D Ribonuclease Inhibitor 1 53 IPR032675 -
Pral5252g00001 403 PANTHER LEUCINE RICH REPEAT KINASE 2 1 400 - -
Pral5252g00001 403 Gene3D Phosphorylase Kinase; domain 1 89 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5252g00001 Pral-Chr5252 19396 20700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5252g00001 1 303 Receptor kinase-like Gene Family AT4G08850 44.984 2.83e-80 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral5252g00001 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5252g00001 - - gmx:100814345 482.256