Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5249g00003 ATGGAGCTAAAGAAGCCGGAAATTTTGTTTGTTGCCAACCCTAGGAGGGCTCCAGGTGCGTTTACTCAATACATACATGCAGGATCAGCCAGTGGTGTTTTAAAAACAGGACAGGATGTGCATAATAACATCTCAATACAGCCAGGGAAAGAATTCTCTGCCGAGTTTGGTCATGAAGGAATTGCTGGTAGAAGAGAACCTGCTGCGCCTGATTCACTTGGAAAGCATGAAGGTAGGTTTGGTATTCACGTGGAGAGTGGCCAAGTGAGATATGAAGATCTTACTAATATTCTGGGATTGAAGAGAATGGCCTCTGAGAATCCTTTTGACGTTGCCGATCTTAACTTGGCACAAGAGCCAACTCAAGAGATAGAAAATAGGACTTTTGTTGATAAAAATAGCAAAATTCAAAAGGAAGGTGGCAGTGTTACACAAGGAGTGAGGAAAACTCTTGGTGAATCAGTTGGTGACCAAGCTGTTACAGGAGCACCTGGGTCTCCCTTTCTCAGAAAAGAATCCTCCTATTCCAATGAGGTTTCTGGTTTAGGAGGTTCAGATGATTCTCAATCTGGAAAAATTAAGTTACTATGCAGCTTTGGTGGAAAAGTATTACCAAGGCCCAGTGACGGGAAACTCAGATATGTAGGGGGAGAGACTCGCATTATATCTATCCGAAGGGATATTTCATGGCAAGGACTTGTTAAGAAGACCTTGGGTATTTGCAATCATCCTCACACAATTAAGTACCAGCTTCCAGGTGAGGATCTTGATTCTCTAATATCTGTTTCCTCTGACGAGGATCTTCAAAACATGATAGATGAGTACCATGGGCCTGAAAGGCATAAGGGATCTCAAAGACTTCGAATTTTTTTAATTCCCTTGAGTGAACCTGAAAAGGAATTGTCATTTGAAGCAAGAACTGATCAGCAGAGTAATCCTGATTACCAATATGTTGTTGCGGTGAATGGCATAGGGGACTGTAGTCCTGGAATAAATGGTTCAGGGCAGAGCTTGACAAATGAAGTTGGTCCATTGGGGACGAGTTTGAATTTTGCTCCGGACTTTCAGAAAAGATTTCCAAATACACATTCTTCTTCGGAGATCAAGGGTGGTGGTAGTGTTATACATCCAAATGGGTTTTTTAATGAATCTCAGAGTCTGCAGAGGACCTCCAATCAACATCAACATATTTCTACTACCCCATTTGACGGAGGAAATTTGAGCACAGTTTATCTGCAGTCTCAAGGTAATAGCTCATGGCAGGAAAGTGCTGCAGGTAGCTTATCCTTTATTACTGCCCAATTATCGCCTGAGACATCTAGTGTACCTGCTGATAGCAGATGCTCCCAACAAATGGCTGCAACTTTCCTATATGACAATCACCCCTGCCAACAAGCTGATGTTACTCTGCCAGAGCTGTACCACCAGAAGCTATTCAAGAATAATCCTGGCAAGGAATTTATAACGGCCTCATATGCTAATCAAAGTGACAGTTGTAATGATGAAATTTTGGGTGAAAAGTCTATGCATCAATCAGGAAATCCTCTTTCCAGCCTGGGCGAATCAGTTTGTCCACAGTCTGGATCAAATTGTATTCCTGATTCTCTAAATTGGATGCCCCATGCATTTTCTGATTCGAAGTTGCATGAGAGTGGATTAAAGTCTGGTTACTGCTCTCAAGAAGGGGTTGGTCAATTTTCCTCGTTGAACCTTTCAGTGGCTCAGTTATCTTCAATGTTATCCTCCAATGTTTCACAAAGGGACCCTGTGGAAATCCAGCATGATCCGCTTCTCATTTATCCCCAAAGACAAAGTAAGATACCAAATGTTGAGCCAGGTGAGTTGCACAGAAGGCAGGATTTTCCATTTTCTTCTCCATCTGCGGTATGTTTAGGAGTGAATGATCCTATTCAGAAGGATAGCATTTTATACAGTAGGGGGAATCCTTTAGCTCAAACTGATTTAACAGCACCTAGCTTTATAGAGCGGCAGTGTGGGGACAATACTGTGAAAACAGAAATCATGAAGAGAATGGAAGACAAAAGTTCTCTTCAGACTAACGAGAGCAATCTTTATGAGAGGGAATCACCTGCCGTTGCTATAGAGCATGTGAATGATTTGCATATTCTGGATTCTTCTCCAGCATCTAATTCAAACATTAAGATTAATCAGTTGGAGCAATCTTATGATGGTATGATTTCTGCATCCTCTTGCTTGACAGGAATTTCCCAAAACAATCTGATTGAGAAGACCCCATCAAATTTTCTTGACATGAGACACGGGACTAGTGATGGAAGAGATTGTGGTTTAACTGAAGGTTTGAATGGTGGGCTGGGATTTGATTTTTCTTGGACCAGAAAATCTAGCTTTAATGCTTCATCCCTAAAATGTGAAGGAACCTCTTCTGGCAAAACTTCTCCAAGCGATTGCTTGTTCGACCTGTCCATGGACCCGGTTTCTCGTAAACAAGCACAAGTTCAACCTTTTCACAAGGATACAGATCTCTGTAGAAATCCGACAAACTCAAGCAAGAATACTGTGTTTAAAAGAGTATCTTCTCTCGATGAACTTGTAGCTAGTTCTAGTCAAGTGGTTGATCAGTATAGTGGTGGAACTCTTGCTTGTGAAACAAAAGCTGAAGATATCACGTTGGAGCAATCAAAAAATTTTGAAAAGTGCAACAATTTGAATAAAGTTGAGCCACTTATTGGTGTAGAAGATTTGACTGATGTTGTTCCTCCAAGTGTTGAGCCTTCATTGGTGCCCAGCCCACATATAGTGGTTGAAATTGGAAGTGATGTTGTATCCCCATCTGCAACAGAATTGGAGAGCGCTATTCCAGATTCTGAACCTGAGGATTTTAAAGATGATGAAGAAGACAAGAATGAATCCCTTACTGTTGCAATGATAGCGGAAATGGAAGCCAGCATCTATGGCTTACAGATAATTCAAAATGCCGATCTTGAAGAACTTCGGGAGTTAGGATCTGGTACTTATGGAACTGTTTATCACGGAAAATGGAGGGGAACTGATGTTGCTATAAAGAGAATTAAAAGGAGCTGCTTTTCAGGAAGATCTTCTGAGCTAGAGCGATTGACAAAAGACTTCTGGAGAGAGGCGCAAATTCTCTCAAATCTTCACCACCCCAACGTGGTTGCTTTTTATGGGGTTGTACCGGATGGAGCTGGAGGAACCTTGGCGACTGTAACTGAATATATGGTTAACGGTTCCCTTAGGCATGTCCTTGTCAAGAAGGATAGATTACTTGATCATCGTAAAAAGCTAATAATTGCCATGGATGCAGCTTTTGGAATGGAATATTTACATTCAAAGAATATTGTTCATTTTGATTTGAAATGTGACAATTTACTTGTCAATCTGAGGGACCCACAGAGACCCATATGTAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCCTGGTATCTGGGGGTGTGCGAGGAACCCTTCCTTGGATGGCACCAGAGCTGTTGAACGGCAGTAGCAACCGGGTTTCCGAGAAGGTTGATGTTTTCTCATTTGGCATCTCTATGTGGGAGATATTGACTGGGGAGGAACCTTATGCAGATATGCATTGTGGCGCTATTATCGGGGGGATTGTAAAGAACACTCTTCGACCACCAATTCCTCCCCGTTGTGACCCTGAGTGGAGGAAGCTTATGGAAGAATGTTGGTCACCTGAACCCGATAGCCGACCATCTTTTACTGAGATAACTAGTCGTCTCCGATCAATGTCTATGGCCCTCCAAGCCAAGCCTCATAATCAGTTGCGGCAGACAACAAACGGTGTTCATTCCTGA 3828 0.4214 MELKKPEILFVANPRRAPGAFTQYIHAGSASGVLKTGQDVHNNISIQPGKEFSAEFGHEGIAGRREPAAPDSLGKHEGRFGIHVESGQVRYEDLTNILGLKRMASENPFDVADLNLAQEPTQEIENRTFVDKNSKIQKEGGSVTQGVRKTLGESVGDQAVTGAPGSPFLRKESSYSNEVSGLGGSDDSQSGKIKLLCSFGGKVLPRPSDGKLRYVGGETRIISIRRDISWQGLVKKTLGICNHPHTIKYQLPGEDLDSLISVSSDEDLQNMIDEYHGPERHKGSQRLRIFLIPLSEPEKELSFEARTDQQSNPDYQYVVAVNGIGDCSPGINGSGQSLTNEVGPLGTSLNFAPDFQKRFPNTHSSSEIKGGGSVIHPNGFFNESQSLQRTSNQHQHISTTPFDGGNLSTVYLQSQGNSSWQESAAGSLSFITAQLSPETSSVPADSRCSQQMAATFLYDNHPCQQADVTLPELYHQKLFKNNPGKEFITASYANQSDSCNDEILGEKSMHQSGNPLSSLGESVCPQSGSNCIPDSLNWMPHAFSDSKLHESGLKSGYCSQEGVGQFSSLNLSVAQLSSMLSSNVSQRDPVEIQHDPLLIYPQRQSKIPNVEPGELHRRQDFPFSSPSAVCLGVNDPIQKDSILYSRGNPLAQTDLTAPSFIERQCGDNTVKTEIMKRMEDKSSLQTNESNLYERESPAVAIEHVNDLHILDSSPASNSNIKINQLEQSYDGMISASSCLTGISQNNLIEKTPSNFLDMRHGTSDGRDCGLTEGLNGGLGFDFSWTRKSSFNASSLKCEGTSSGKTSPSDCLFDLSMDPVSRKQAQVQPFHKDTDLCRNPTNSSKNTVFKRVSSLDELVASSSQVVDQYSGGTLACETKAEDITLEQSKNFEKCNNLNKVEPLIGVEDLTDVVPPSVEPSLVPSPHIVVEIGSDVVSPSATELESAIPDSEPEDFKDDEEDKNESLTVAMIAEMEASIYGLQIIQNADLEELRELGSGTYGTVYHGKWRGTDVAIKRIKRSCFSGRSSELERLTKDFWREAQILSNLHHPNVVAFYGVVPDGAGGTLATVTEYMVNGSLRHVLVKKDRLLDHRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGISMWEILTGEEPYADMHCGAIIGGIVKNTLRPPIPPRCDPEWRKLMEECWSPEPDSRPSFTEITSRLRSMSMALQAKPHNQLRQTTNGVHS 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5249g00003 1275 MobiDBLite consensus disorder prediction 170 187 - -
Pral5249g00003 1275 ProSiteProfiles Protein kinase domain profile. 988 1266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5249g00003 1275 PRINTS Tyrosine kinase catalytic domain signature 1178 1200 IPR001245 GO:0004672|GO:0006468
Pral5249g00003 1275 PRINTS Tyrosine kinase catalytic domain signature 1107 1125 IPR001245 GO:0004672|GO:0006468
Pral5249g00003 1275 PRINTS Tyrosine kinase catalytic domain signature 1070 1083 IPR001245 GO:0004672|GO:0006468
Pral5249g00003 1275 PRINTS Tyrosine kinase catalytic domain signature 1222 1244 IPR001245 GO:0004672|GO:0006468
Pral5249g00003 1275 MobiDBLite consensus disorder prediction 156 187 - -
Pral5249g00003 1275 ProSitePatterns Protein kinases ATP-binding region signature. 994 1015 IPR017441 GO:0005524
Pral5249g00003 1275 SMART PB1_new 207 294 IPR000270 GO:0005515
Pral5249g00003 1275 Pfam Protein tyrosine and serine/threonine kinase 989 1251 IPR001245 GO:0004672|GO:0006468
Pral5249g00003 1275 CDD STKc_MAP3K-like 994 1251 - -
Pral5249g00003 1275 SUPERFAMILY CAD & PB1 domains 208 293 - -
Pral5249g00003 1275 Gene3D - 211 293 - -
Pral5249g00003 1275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1113 1125 IPR008271 GO:0004672|GO:0006468
Pral5249g00003 1275 MobiDBLite consensus disorder prediction 939 960 - -
Pral5249g00003 1275 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 212 294 - -
Pral5249g00003 1275 SUPERFAMILY Protein kinase-like (PK-like) 975 1250 IPR011009 -
Pral5249g00003 1275 Gene3D Phosphorylase Kinase; domain 1 981 1075 - -
Pral5249g00003 1275 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1076 1267 - -
Pral5249g00003 1275 SMART serkin_6 988 1257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5249g00003 1275 CDD PB1_UP2 196 292 - -
Pral5249g00003 1275 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 981 1075 - -
Pral5249g00003 1275 Pfam PB1 domain 209 291 IPR000270 GO:0005515
Pral5249g00003 1275 Gene3D Transferase(Phosphotransferase) domain 1 1076 1274 - -
Pral5249g00003 1275 PANTHER SERINE-THREONINE PROTEIN KINASE 259 1254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5249g00003 Pral-Chr5249 15629 24413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5249g00003 190 324 MAP Kinase Kinase Kinase AT1G16270 58.519 2.98e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Pral5249g00003 PK_Tyr_Ser-Thr 8.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5249g00003 - - gmx:100790135 1289.25