Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5248g00003 ATGGAAGATGAGGAAAAAGTAGTCCGCAAGGTCGGAGGAGGAGAAGAAGACTCTCGAGTTTTCCAGTGTCAGTTCTGTTCGAGAAAGTTTTACAGCTCTCAAGCTTTGGGAGGACACCAGAATGCCCACAAAAAAGAGAGAACGGCTGCGAGAAAGGCTAAAAGGGCATTTGAGTGTTCATCTGCCTCTTTTGCTTCTTCTCTTCCGCCTCCAATGCCTTTTGGTGCTCCCACCCATCAAATGGGTCTTCTGAATCCTACCGTGTTCCTCGCTTCAAACCTCGGTCACTTCCAAACGCATCAGATTTTTGACCACTTTGGAGCGAACGTTGCGCCTAGATTTGGCGGGAATGCTGTGTTTTATGAGGGAAGCTGTTCGAGCAGTGGGTTTTGTGAAGATGTCGGCGAGAGAGGCTTGGGGAATTGGCGCAGGAACATGTCATTGACAAACGACGATCACGGGATTGGCATAATGAGTCATTGTAAAGAGAAAGATCAAACTCTTGATCTGACTCTTCATCTATAG 525 0.4743 MEDEEKVVRKVGGGEEDSRVFQCQFCSRKFYSSQALGGHQNAHKKERTAARKAKRAFECSSASFASSLPPPMPFGAPTHQMGLLNPTVFLASNLGHFQTHQIFDHFGANVAPRFGGNAVFYEGSCSSSGFCEDVGERGLGNWRRNMSLTNDDHGIGIMSHCKEKDQTLDLTLHL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5248g00003 174 Gene3D Classic Zinc Finger 5 67 - -
Pral5248g00003 174 SUPERFAMILY beta-beta-alpha zinc fingers 18 48 IPR036236 -
Pral5248g00003 174 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Pral5248g00003 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
Pral5248g00003 174 PANTHER ZINC FINGER PROTEIN JAGGED 15 174 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5248g00003 Pral-Chr5248 24511 25045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5248g00003 2 174 C2H2 Transcription Factor Family AT5G48890 36.464 1.37e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5248g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5248g00003 - - pcin:129290111 193.741