Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5248g00001 ATGGGTCGTAATGTTGGAGAACATGCTCTTATAGTTTACGACAATCTTTCTCACTTCTTCATCTTCCGTTCTTCAACCTTCCTTTTTCTGCTTCTTCCTCATCTTTCGTCTTCTTCAAACAATGAAGCTCGAGTTCTACTTTCATGGCTCCACACTTCCTCCTCCTCCTCCTCCTCTGTTCCTCCCTCTTTTTTCTCCGACTGGAACCCTTCAAATCCCAACCCTTGTAACTGGTCTTTCATCAAATGCTCTTCACAAAACTTCGTCACAGAGATAAACATCCAAGCAACTGAATTAGCGCTTCCTTTTCCTCCCAACATTTCAGCTTTTTCCTTTCTCCAGAAACTTGTCATTTCAGGTGCTAACCTTTCTGGGTTGATCTCACCTGATATTGGAAACTGTCCCGAGCTTATAACCATTGATCTTAGCTCAAATAATCTTTCTGGTGCAATTCCTTCCAGCATCGGCAAGCTAAAAAACCTCCAAAATTTGAGCTTGAACTCTAACCAGCTTACTGGGGAAATCCCCAAAGAGCTTGGTGATTGTGTTAGTTTGAAGAACCTTAATATTTTCGATAACAATCTTAGTGGAGTTCTTCCTGTTGAGTTGGGAAAACTTTCAAATCTGGAGGTTATAAGAGCCGGAGGAAACAATGGCATTGTGGGGAAGATTCCTGACGCTCTTGGGGATTGCAGGAATCTGACTATATTAGGTCTGGCTGACACTAGAATCTCTGGTTCATTACCTGCTTCTTTAGGTAAGTTAAGGTTGCTTCAGACAATTTCTATTTATAATACTATGTTGTCTGGTGAGATTCCTCCTGAAATAGGAAACTGCTCTGAGCTTGTGAACTTGTTTTTGTATGAGAATGAACTATTTGGTTCATTGCCAAAAGAGCTGGGTAAACTTCAGAAACTTGAGAAAATGTTGCTGTGGCAGAATAAGTTTGCTGGAAGCATGCCTCAAGAAGTTGGTAACTGTAGAAACTTGAAGATTCTTGATGTTTCTTTAAACTCTTTGTCTGGAACCATACCTACTACTTTTGGAAACCTCTCGAATCTTGAAGAGCTCATGTTAAGTAACAATAACATATCTGGTTCAATCCCGCCTGTTCTTTCCAATCTGTCGGAGCTCATACAGCTCCAGATAGATACTAATCAAATATCAGGTTCAATTCCTGCTGAACTCGGAAAGTTGAAGAAGCTTACTGTCTTTTTTGCTTGGCAAAATAAACTTGAAGGAAGCATTCCTTCTGAATTGGGTGGTTGTGCTAGCCTAGAAGCTCTTGATTTGTCATATAATACACTCACTGATGGCTTACCTCCAGGCTTATTTCAGCTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAACCATCTTTCTGGGCCTATACCTCAGGAAATTGGTACATGTAGTTCTCTTATTCGGCTCCGACTTTTGAACAACCAAATTGGTGGAGAGATTCCAAGAGAACTTGGTTTTCTCAGTAACTTAAACTTTCTTGATCTGTCAGAGAATAATCTTACTGGTTTAGTGCCAGTTGAGCTAGGAAATTGCAAACTGCAAATGCTGAACCTTAGCAATAACTCCCTTTCTGGTGTTTTACCTCGTTCCTTATCTTCGCTCACAAGGCTTGAGGTTTTAGATGCTTCTCTGAATCACTTCTCTGGTGAAATTCCTGCTAATATTGGCCAACTCTCTTCACTTATTAGGCTTATTCTCAGCAGAAACTCATTCTCTGGATCCATACCCTCATCACTAGGTCTTTGTTCAAGTCTTCAACTCCTTGATCTCAGTAGCAACAATCTCTCAGGAAGCATCCCCGAAACTGTTGATATAGAAGCACTTGACATTGCTTTGAATTTGAGTCACAATGCATTATCTGGAGTAATCCCACCACAGGTTTCTTCTCTAAATAAGCTTTCTGCTCTAGACCTTTCCCACAACAAGCTTGAAGGAGATTTGGTGGCTCTTTCAGGACTTGAAAATCTTGTTTCTCTCAACATCTCCTTCAACAAGTTCACTGGCTATCCGGACATCAAGTTATTCCATCAATTGTTACCAACAGATTTGGAAGGAAATCAGGGCTTGTGTCCAAGTGGCCGGGATTCATGCTTCATTAGCAATTCTGCAATGGCAAGCACAAATGAAAGTGATTCTAAAAGAGCTGAGAGAATCAAATTGGGCATAGGATTGCTAAGTGCCTTCACCATTGCACTGGCAATCTTTGGGATTCTTACAGTGGTTCGAGCAAAGAAAATGGCTCAGGATGATAACGATTCTGAGATGGGAGGGGATTCATGGCCTTGGCAGTTTACACCATTTCAAAAATTAAACTTCTCCATCGATCAAGTTCTAAAATGTCTGGTTGACTCTAATATGATAGGAAAGGGATGTTCAGGTGTTGTTTATCGTGCAGAACTAGAGAATGGTGATGTCATTGCTGTGAAAAAACTATGGCCAACAACAACGGCTGCTAGATATGATTGCCAACGTGACAAGTTGGCAGTTCATGGCAGAGGAGTTCGTGATTCCTTCTCAGCTGAGGTTAAGACCCTGGGTTCCATTCGACACAAGAACATTGTGAGGTTCCTTGGTTGCTCTTGGAATCGAAATACTAGGCTACTTATGTATGACTACGTACCAAATGGGAGCCTGGGAAGTTTGCTGCATGAACGAAGTGGTGGAAACTGCTTGGAGTGGGACATCAGGTATCGGATATTACTGGGAGCAGCTCAAGGCTTGGCCTATCTTCACCATGACTGTGTTCCTCCCATTGTCCATAGGGACATCAAGGCCAACAATCTCATAGGTCCTGATTTTGAGCCATACATTGCAGATTTTGGGCTTGCTAAACTTGTTGATGAGGGAGATTTTGCAAGATCCTCTAGCACACTGGCAGGTTCCTATGGCTACATTGCTCCTGAATATGGATACATGATGAAGATAACAGAGAAAAGTGACGTGTATAGTTATGTTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGACCCAACAATACCAGATGGGCTCCACATCGTTGACTGGGTTAGACAGAAAAGAGGAGGAAGTGAAGTGCTAGATCCAAGCCTATGTGCAAGGCCTGCACCTGAAATAGAAGAAATATTGCAGACTTTAGGGGTGGCTTTGTTGTGT 3162 0.4168 MGRNVGEHALIVYDNLSHFFIFRSSTFLFLLLPHLSSSSNNEARVLLSWLHTSSSSSSSVPPSFFSDWNPSNPNPCNWSFIKCSSQNFVTEINIQATELALPFPPNISAFSFLQKLVISGANLSGLISPDIGNCPELITIDLSSNNLSGAIPSSIGKLKNLQNLSLNSNQLTGEIPKELGDCVSLKNLNIFDNNLSGVLPVELGKLSNLEVIRAGGNNGIVGKIPDALGDCRNLTILGLADTRISGSLPASLGKLRLLQTISIYNTMLSGEIPPEIGNCSELVNLFLYENELFGSLPKELGKLQKLEKMLLWQNKFAGSMPQEVGNCRNLKILDVSLNSLSGTIPTTFGNLSNLEELMLSNNNISGSIPPVLSNLSELIQLQIDTNQISGSIPAELGKLKKLTVFFAWQNKLEGSIPSELGGCASLEALDLSYNTLTDGLPPGLFQLQNLTKLLLISNHLSGPIPQEIGTCSSLIRLRLLNNQIGGEIPRELGFLSNLNFLDLSENNLTGLVPVELGNCNXLQMLNLSNNSLSGVLPRSLSSLTRLEVLDASLNHFSGEIPANIGQLSSLIRLILSRNSFSGSIPSSLGLCSSLQLLDLSSNNLSGSIPXETVDIEALDIALNLSHNALSGVIPPQVSSLNKLSALDLSHNKLEGDLVALSGLENLVSLNISFNKFTGYLXDIKLFHQLLPTDLEGNQGLCPSGRDSCFISNSAMASTNESDSKRAERIKLGIGLLSAFTIALAIFGILTVVRAKKMAQDDNDSEMGGDSWPWQFTPFQKLNFSIDQVLKCLVDSNMIGKGCSGVVYRAELENGDVIAVKKLWPTTTAARYDCQRDKLAVHGRGVRDSFSAEVKTLGSIRHKNIVRFLGCSWNRNTRLLMYDYVPNGSLGSLLHERSGGNCLEWDIRYRILLGAAQGLAYLHHDCVPPIVHRDIKANNXLIGPDFEPYIADFGLAKLVDEGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGXVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGSEVLDPSLCARPAPEIEEILQTLGVALLC 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5248g00001 1059 Gene3D Ribonuclease Inhibitor 157 245 IPR032675 -
Pral5248g00001 1059 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Pral5248g00001 1059 SUPERFAMILY L domain-like 392 709 - -
Pral5248g00001 1059 PRINTS Leucine-rich repeat signature 498 511 - -
Pral5248g00001 1059 PRINTS Leucine-rich repeat signature 640 653 - -
Pral5248g00001 1059 FunFam Putative LRR receptor-like serine/threonine-protein kinase 621 706 - -
Pral5248g00001 1059 Gene3D Ribonuclease Inhibitor 538 619 IPR032675 -
Pral5248g00001 1059 ProSiteProfiles Leucine-rich repeat profile. 353 376 IPR001611 GO:0005515
Pral5248g00001 1059 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 442 536 - -
Pral5248g00001 1059 Gene3D Transferase(Phosphotransferase) domain 1 884 1059 - -
Pral5248g00001 1059 Gene3D Ribonuclease Inhibitor 42 156 IPR032675 -
Pral5248g00001 1059 SMART serkin_6 792 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5248g00001 1059 ProSitePatterns Protein kinases ATP-binding region signature. 798 821 IPR017441 GO:0005524
Pral5248g00001 1059 Gene3D Phosphorylase Kinase; domain 1 777 883 - -
Pral5248g00001 1059 ProSiteProfiles Protein kinase domain profile. 792 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5248g00001 1059 SMART LRR_sd22_2 158 179 - -
Pral5248g00001 1059 SMART LRR_sd22_2 495 516 - -
Pral5248g00001 1059 SMART LRR_sd22_2 351 377 - -
Pral5248g00001 1059 SMART LRR_sd22_2 640 665 - -
Pral5248g00001 1059 FunFam LRR receptor-like serine/threonine-protein kinase 541 616 - -
Pral5248g00001 1059 SUPERFAMILY RNI-like 116 524 - -
Pral5248g00001 1059 FunFam Nuclear pore complex protein NUP107 39 201 - -
Pral5248g00001 1059 Pfam Protein kinase domain 795 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5248g00001 1059 Gene3D Ribonuclease Inhibitor 343 439 IPR032675 -
Pral5248g00001 1059 Gene3D Ribonuclease Inhibitor 246 342 IPR032675 -
Pral5248g00001 1059 Gene3D Ribonuclease Inhibitor 620 708 IPR032675 -
Pral5248g00001 1059 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 477 1059 - -
Pral5248g00001 1059 Gene3D Ribonuclease Inhibitor 440 537 IPR032675 -
Pral5248g00001 1059 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 218 441 - -
Pral5248g00001 1059 Pfam Leucine rich repeat 328 388 IPR001611 GO:0005515
Pral5248g00001 1059 Pfam Leucine rich repeat 496 556 IPR001611 GO:0005515
Pral5248g00001 1059 Pfam Leucine rich repeat 622 676 IPR001611 GO:0005515
Pral5248g00001 1059 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 775 883 - -
Pral5248g00001 1059 SMART LRR_typ_2 519 542 IPR003591 -
Pral5248g00001 1059 SMART LRR_typ_2 495 518 IPR003591 -
Pral5248g00001 1059 SMART LRR_typ_2 567 591 IPR003591 -
Pral5248g00001 1059 SMART LRR_typ_2 423 447 IPR003591 -
Pral5248g00001 1059 SMART LRR_typ_2 351 375 IPR003591 -
Pral5248g00001 1059 SMART LRR_typ_2 158 182 IPR003591 -
Pral5248g00001 1059 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 884 1059 - -
Pral5248g00001 1059 SUPERFAMILY Protein kinase-like (PK-like) 779 1017 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5248g00001 Pral-Chr5248 19 4667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5248g00001 38 1059 Receptor kinase-like Gene Family AT5G56040 47.155 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral5248g00001 Pkinase 6.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5248g00001 - - gmx:100794698 1553.5