Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5247g00004 ATGCCCTTGCTTTTACCCGCCGCCATCGCCTTCCCTGTGAAAAGGTTCAATGACTCTTCGAATGAGCATGCAGTAAAAAATCCGGAGGAGATAGCCACTATGGTCGATATGAGCATACGCAATCATACGGAAAGAAGGAATTTGGGTTTCTTCTCTTGCGGGACGGGGAATCCCATCGATGACTGCTGGCGGTGTGACCGGAACTGGCAACGCCACCGGAAACAGCTGGCCAACTGCGGCATTGGGTTCGGACGCAATGCCATCGGAGGGCGGGACGGAAAGTACTACGTTGTGAGCGACCCGAGCGACGACGACCCCGTCAACCCAAAACCAGGCACCCTCCGCCACGCCGTCATCCAAGACGCTCCCTTATGGATTGTGTTCAAAAGGGACATGGTCATCACTCTAAAGCAAGAGCTCATCATGAACAGCTTTAAGACCATTGATGGCCGCGGTGTCAACGTCCACATCGCTTATGGGGGATGCATCACTATCCAATACGTCACCAACGTCATCATCCACGGCCTGAACATCCATGACTGCAAACCAACTGGCAACGCCATGGTTCGTAGCTCGCCTTCGCATTACGGATGGAGGACCATGGCTGATGGAGATGGAATTTCCATCTTTGGTGCGAGCCACATCTGGATTGATCACAACTCACTCTCTAAATGTGCAGATGGTCTTGTTGATGCTGTCATGGGTTCGACTGCCATCACCATTTCCAACAATTTCTTTACTCACCACGATGAGGTGATGCTTTTGGGTCACAGTGACTCTTATGTGAGAGATAAGCATATGCAAGTGACCATTGCCTACAACCATTTTGGGGAGGGCCTTATTCAGAGAATGCCAAGATGCAGACACGGGTATTTCCACGTGGTCAACAATGACTACACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCAGATCCCACCATTAATAGCCAGGGGAACCGATACCTTGCCCCTCAGAACGCTTTTGCTAAGGAGGTGACGAAGAGAGTTGACACGGATCAAGGAGTATGGAAAAGTTGGAATTGGAGGTCAGAGGGAGACCTTTTGCTGAATGGTGCCTTCTTCACTTCGTCAGGTGCTGGTTCTGGAGCCAGCTATGCCAGAGCTTCAAGTTTATCAGCCAAATCATCTTCTTTGGTTGGTACCATCACCTCTGGTGCCGGTGTTCTTAGCTGCCGGAGGGGTTCTGCGTGTTAA 1218 0.5099 MPLLLPAAIAFPVKRFNDSSNEHAVKNPEEIATMVDMSIRNHTERRNLGFFSCGTGNPIDDCWRCDRNWQRHRKQLANCGIGFGRNAIGGRDGKYYVVSDPSDDDPVNPKPGTLRHAVIQDAPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGGCITIQYVTNVIIHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGASHIWIDHNSLSKCADGLVDAVMGSTAITISNNFFTHHDEVMLLGHSDSYVRDKHMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNAFAKEVTKRVDTDQGVWKSWNWRSEGDLLLNGAFFTSSGAGSGASYARASSLSAKSSSLVGTITSGAGVLSCRRGSAC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5247g00004 405 SUPERFAMILY Pectin lyase-like 34 399 IPR011050 -
Pral5247g00004 405 FunFam Pectate lyase 56 398 - -
Pral5247g00004 405 Gene3D - 56 398 IPR012334 -
Pral5247g00004 405 SMART amb_all 131 328 IPR002022 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Pral5247g00004 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Pral5247g00004 405 Pfam Pectate lyase 139 320 IPR002022 -
Pral5247g00004 405 PANTHER PECTATE LYASE 18-RELATED 26 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5247g00004 Pral-Chr5247 25704 29350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5247g00004 21 405 Polysaccharide Lyase AT4G13710 79.744 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5247g00004 K01728 - gmx:100790659 699.508