Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5247g00003 ATGGCCTTCATCAAGATTTTCTCCCTCCATGCTCTCATCTCCTTCGTCTTCTTCTGCTACACAGTCTCTCCCTCTCCTTCTGCCTCCTCTGACGTTGAACTTCTCTTGGGGCAAATCAAAGCATCCTTACAGGGAAACACCCAGGATATCATTTTGTCTTCTTGGAACTCCTCTGTACCTCTTTGCCAATGGAGGGGTCTCAAGTGGGTCTTCTCCAATGCCTCTTCTCTCTCCTGCTCCGTCTCTTCTCCTCATTGGACCAATCTTTCACTCTTCAAAGACCCTCATCTTCATTTGCTCTCTCTTCAACTTCCTTCTGCTAATCTCTCTGGTTCCATCCCCCGGGAGCTTTCTGAGTTCCCTATGCTTCAGAGCCTCTACCTCAACTTCAATTCCTTGACTGGAACAATTCCTCTTGAACTCGGCTATAGTTCCTCCCTCTCCGACATCGATTTGCGTGAAAATTTTCTGAGTGGAGCTTTGCCTCCGTCCATCTGGAATCTGTGCGATGGGCTTGTTTCTCTCAGACTCCATGGAAATTTGCTCTCTGGGTCTATTCCAGAACCAGCATTGCCAAATTGTTCTTGCGAGAATTTGCGATTTCTTGATTTTGGCAACAACAACTTTTCTGGGAATTTCCCAGACTTCGTTACTCGTTTTGGTGGGTTGAAACAGCTTGACTTGGGTAGTAATATGTTTGTAGGCTCGATTCCTCAGAGCTTAGATGGGCTAAGGCTCGAGAAATTGAACCTTTCCCACAACAATTTCAGTGGGGTTTTGCCAACTTTTGTGGAACCCAAGTTTGGTGTGGATATTTTTGAAGGGAATAACCCAGACTTATGTGGGCCACCCTTGAGAGGTTGTGGTGGAAATTCTAGTTCTAGACTAAGTGCTGGTGCTATCGCCGGTATAGTTATCAGTCTGATGGCAGGAAGTGTTGTTTTAGTTTCTTTGCTGATTGGGTATGTGCAAAACAAGAGGAGGAAGGGCAGGGGAGAGAGTGACGATGAATTGGAGGAGGAAGAGGACGAGGAGAATGGTGATAATAGTAATGGTGATGGTGGTAGCAGTGAGAGCAAGCTTATGTTATTTCAGGGTGGCGAGAATTTGACGTTAGACGATGTGTTGAATGCAAATGGGCAAGTTATGGAGAAGACATATTATGGGACCGTGTACAAGGCAAAGCTTGCTGATGGAGGGACCATTGCATTGAGGTTATTGAGAGAAGGTTGCTGCAGGGACACGGCTTCAAGCTTGCCCGTTATAAAGCAACTGGGAAAAATTCGCCACGAGAATTTGATTCCTTTGAGAGCTTTCTATCAAGGAAAAAGAGGGGAGAAGCTCCTTATTTCTGATTATCTGCCTCTTCGGACCCTGCATGATCTTCTCCATGAAATCAAAGTAGGAAAACCAGTGATGAACTGGGCTAGGCGACACAAGATTGCATTGGGAGTAGCTAGAGGGCTTGCATATCTTCACACAGGACTTGATTCTCCAATTACACATGGAAGTGTCAGATCAAAGAACATTGTTGTGGACGATTTCTTCGTGGCCAGGCTCACTGAGTTTGGGCTTGATAAGCTGTTGGTTCCAGCAGTAGCAGATGAAATGGTGGCACTTGCCAAGTCTGAGGGTTATAAGGCTCCGGAGCTTCAAAGGATGAATAAATGTAATTCAAGAACTGATGTTTATGCATTTGGAATATTGCTGTTGGAGATTTTGATCGGGAAGAAACCTGGAAAAAGTGGGAGAGGAAGTGAGTTCGTAGATTTGCCTTCTATGGTGAAAGTGGCAGTTTTGGAGGAGACAACAATGGAGGTGTTTGATGTGGAGATTTTGAGAGGGATAAGAAGTCCGATGGAAGAAGGGTTGATTCAGGCTTTGAAGCTAGCAATGGGTTGTTGTGCCCCTGTGGCTTCAGTTAGACCCAGCATGGATGAAATTGTGAGGCAGTTGGAGGAGAACAGACCAAGAAACAGGTCTGCTTTATACAGCCCCGCAGAAACTAGAAGTGGAAGTGGTACCCCATTTTGA 2034 0.4562 MAFIKIFSLHALISFVFFCYTVSPSPSASSDVELLLGQIKASLQGNTQDIILSSWNSSVPLCQWRGLKWVFSNASSLSCSVSSPHWTNLSLFKDPHLHLLSLQLPSANLSGSIPRELSEFPMLQSLYLNFNSLTGTIPLELGYSSSLSDIDLRENFLSGALPPSIWNLCDGLVSLRLHGNLLSGSIPEPALPNCSCENLRFLDFGNNNFSGNFPDFVTRFGGLKQLDLGSNMFVGSIPQSLDGLRLEKLNLSHNNFSGVLPTFVEPKFGVDIFEGNNPDLCGPPLRGCGGNSSSRLSAGAIAGIVISLMAGSVVLVSLLIGYVQNKRRKGRGESDDELEEEEDEENGDNSNGDGGSSESKLMLFQGGENLTLDDVLNANGQVMEKTYYGTVYKAKLADGGTIALRLLREGCCRDTASSLPVIKQLGKIRHENLIPLRAFYQGKRGEKLLISDYLPLRTLHDLLHEIKVGKPVMNWARRHKIALGVARGLAYLHTGLDSPITHGSVRSKNIVVDDFFVARLTEFGLDKLLVPAVADEMVALAKSEGYKAPELQRMNKCNSRTDVYAFGILLLEILIGKKPGKSGRGSEFVDLPSMVKVAVLEETTMEVFDVEILRGIRSPMEEGLIQALKLAMGCCAPVASVRPSMDEIVRQLEENRPRNRSALYSPAETRSGSGTPF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5247g00003 677 FunFam Leucine-rich repeat receptor-like protein kinase 196 288 - -
Pral5247g00003 677 Pfam Leucine rich repeat 198 256 IPR001611 GO:0005515
Pral5247g00003 677 Gene3D Transferase(Phosphotransferase) domain 1 455 668 - -
Pral5247g00003 677 Gene3D Ribonuclease Inhibitor 171 289 IPR032675 -
Pral5247g00003 677 SUPERFAMILY Protein kinase-like (PK-like) 387 653 IPR011009 -
Pral5247g00003 677 SUPERFAMILY L domain-like 62 264 - -
Pral5247g00003 677 Gene3D Ribonuclease Inhibitor 33 170 IPR032675 -
Pral5247g00003 677 ProSiteProfiles Protein kinase domain profile. 377 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5247g00003 677 MobiDBLite consensus disorder prediction 329 358 - -
Pral5247g00003 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 656 IPR046959 -
Pral5247g00003 677 Gene3D Phosphorylase Kinase; domain 1 372 453 - -
Pral5247g00003 677 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 94 186 - -
Pral5247g00003 677 Pfam Protein tyrosine and serine/threonine kinase 383 652 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5247g00003 Pral-Chr5247 21749 25099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5247g00003 9 677 Receptor kinase-like Gene Family AT3G24660 70.536 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pral5247g00003 PK_Tyr_Ser-Thr 5.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5247g00003 - - jre:109006053 1015.76