Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5247g00002 ATGCCAAGGCCGAGGCGGTTCTTGAGCAACCACAACGATCACCACCAAATGCCGAGGCAGCAATCTTTCTCACTTCTTCATCTTCCGTTCTTCAACCTCCTTTTTCTGCTTCTTCCTCATCTTTCGTCTTCTTCAAACAATGAAGCTCGAGTTCTACTTTCATGGCTCCACACTTCCTCCTCCTCCTCCTCCTCTGTTCCTCCCTCTTTTTTCTCCGACTGGAACCCTTCAAATCCCAACCCTTGTAACTGGTCTTTCATCAAATGCTCTTCACAAAACTTCGTCACAGAGATAAACATCCAAGCAACTGAATTAGCGCTTCCTTTTCCTCCCAACATTTCAGCTTTTTCCTTTCTCCAGAAACTTGTCATTTCAGGTGCTAACCTTTCTGGGTTGATCTCACCTGATATTGGAAACTGTCCCGAGCTTATAACCATTGATCTTAGCTCAAATAATCTTTCTGGTGCAATTCCTTCCAGCATCGGCAAGCTAAAAAACCTCCAAAATTTGAGCTTGAACTCTAACCAGCTTACTGGGGAAATCCCCAAAGAGCTTGGTGATTGTGTTAGTTTGAAGAACCTTAATATTTTCGATAACAATCTTAGTGGAGTTCTTCCTGTTGAGTTGGGAAAACTTTCAAATCTGGAGGTTATAAGAGCCGGAGGAAACAATGGCATTGTGGGGAAGATTCCTGACGCTCTTGGGGATTGCAGGAATCTGACTATATTAGGTCTGGCTGACACTAGAATCTCTGGTTCATTACCTGCTTCTTTAGGTAAGTTAAGGTTGCTTCAGACAATTTCTATTTATAATACTATGTTGTCTGGTGAGATTCCTCCTGAAATAGGAAACTGCTCTGAGCTTGTGAACTTGTTTTTGTATGAGAATGAACTATTTGGTTCATTGCCAAAAGAGCTGGGTAAACTTCAGAAACTTGAGAAAATGTTGCTGTGGCAGAATAAGTTTGCTGGAAGCATGCCTCAAGAAGTTGGTAACTGTAGAAACTTGAAGATTCTTGATGTTTCTTTAAACTCTTTGTCTGGAACCATACCTACTACTTTTGGAAACCTCTCGAATCTTGAAGAGCTCATGTTAAGTAACAATAACATATCTGGTTCAATCCCGCCTGTTCTTTCCAATCTGTCGGAGCTCATACAGCTCCAGATAGATACTAATCAAATATCAGGTTCAATTCCTGCTGAACTCGGAAAGTTGAAGAAGCTTACTGTCTTTTTTGCTTGGCAAAATAAACTTGAAGGAAGCATTCCTTCTGAATTGGGTGGTTGTGCTAGCCTAGAAGCTCTTGATTTGTCATATAATACACTCACTGATGGCTTACCTCCAGGCTTATTTCAGCTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAACCATCTTTCTGGGCCTATACCTCAGGAAATTGGTACATGTAGTTCTCTTATTCGGCTCCGACTTTTGAACAACCAAATTGGTGGAGAGATTCCAAGAGAACTTGGTTTTCTCAGTAACTTAAACTTTCTTGATCTGTCAGAGAATAATCTTACTGGTTTAGTGCCAGTTGAGCTAGGAAATTGCAAAGAACTGCAAATGCTGAACCTTAGCAATAACTCCCTTTCTGGTGTTTTACCTCGTTCCTTATCTTCGCTCACAAGGCTTGAGGTTTTAGATGCTTCTCTGAATCACTTCTCTGGTGAAATTCCTGCTAATATTGGCCAACTCTCTTCACTTATTAGGCTTATTCTCAGCAGAAACTCATTCTCTGGATCCATACCCTCATCACTAGGTCTTTGTTCAAGTCTTCAACTCCTTGATCTCAGTAGCAACAATCTCTCAGGAAGCATCCCACCGAAACTATTTGATATAGAAGCACTTGACATTGCTTTGAATTTGAGTCACAATGCATTATCTGGAGTAATCCCACCACAGGTTTCTTCTCTAAATAAGCTTTCTGCTCTAGACCTTTCCCACAACAAGCTTGAAGGAGATTTGGTGGCTCTTTCAGGACTTGAAAATCTTGTTTCTCTCAACATCTCCTTCAACAAGTTCACTGGCTATCTTCCGGACATCAAGTTATTCCATCAATTGTCACCAACAGATTTGGAAGGAAATCAGGGCTTGTGTCCAAGTGGCCGGGATTCATGCTTCATTAGCAATTCTGCAATGGCAAAAGCACAAAATGAAAGTGATTCTAAAAGAGCTGAGAGAATCAAATTGGGCATAGGATTGCTAAGTGCCTTCACCATTGCACTGGCAATCTTTGGGATTCTTACAGTGGTTCGAGCAAAGAAAATGGCTCAGGATGATAACGATTCTGAGATGGGAGGGGATTCGTGGCCTTGGCAGTTTACACCATTTCAAAAATTAAACTTCTCCATCGATCAAGTTCTAAAATGTCTGGTTGACTCTAATATGATAGGAAAGGGATGTTCAGGTGTTGTTTATCGTGCAGAACTAGAGAATGGCGATGTCATTGCTGTGAAAAAACTATGGCCAACAACAATGGCTGCTAGATATGATTGCCAACGTGACAAGTTGGCAGTTCATGGCAGAGGAGTTCGTGATTCCTTCTCAGCTGAGGTTAAGACCCTGGGTTCCATTCGACACAAGAACATTGTGAGGTTCCTTGGTTGCTCTTGGAATCGAAATACTAGGCTACTTATGTATGACTACGTACCAAATGGGAGCCTGGGAAGTTTGCTGCATGAACGAAGTGGTGGAAACTGCTTGGAGTGGGACATCAGGTATCGGATATTACTGGGAGCAGCTCAAGGCTTGGCCTATCTTCACCATGACTGTGTTCCTCCCATTGTCCATAGGGACATCAAGGCCAACAATATTCTCATAGGTCCTGATTTTGAGCCATACATTGCAGATTTTGGGCTTGCTAAACTTGTTGATGAGGGAGATTTTGCAAGATCCTCTAGCACACTGGCAGGTTCCTATGGCTACATTGCTCCTGAATATGGATACATGATGAAGATAACAGAGAAAAGTGACGTGTATAGTTATGGGATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGACCCAACAATACCAGATGGGCTCCACATCGTTGACTGGGTTAGACAGAAAAGAGGAGGAAGTGAAGTGCTAGATCCAAGCCTATGTGCAAGGCCTGCACCTGAAATAGAAGAAATATTGCAGACTTTAGGGGTGGCTTTGTTGTGTGTGAACGCTAGCCCAGAAGACAGGCCAACCATGAAAGATGTAGCCGCAATGCTTAAAGAGATCAGGCAAGAAAGGGAGGAATATATGAAAGTTGATGTGCTTCTTCACAGATCTTCTGCAAATGAAGAAGATAATAATACTAATAATCATTCAAGTGAAGAGCCAAGAGGGGATACAATGAAGCAATCATACCCGGTAAACAGCAACAACACTAGTTTTTCTGCCTCTCTTCTTGTCTCTCCTTCGTCCTCCAATACCAAAGTCACATTCAAATAG 3474 0.4191 MPRPRRFLSNHNDHHQMPRQQSFSLLHLPFFNLLFLLLPHLSSSSNNEARVLLSWLHTSSSSSSSVPPSFFSDWNPSNPNPCNWSFIKCSSQNFVTEINIQATELALPFPPNISAFSFLQKLVISGANLSGLISPDIGNCPELITIDLSSNNLSGAIPSSIGKLKNLQNLSLNSNQLTGEIPKELGDCVSLKNLNIFDNNLSGVLPVELGKLSNLEVIRAGGNNGIVGKIPDALGDCRNLTILGLADTRISGSLPASLGKLRLLQTISIYNTMLSGEIPPEIGNCSELVNLFLYENELFGSLPKELGKLQKLEKMLLWQNKFAGSMPQEVGNCRNLKILDVSLNSLSGTIPTTFGNLSNLEELMLSNNNISGSIPPVLSNLSELIQLQIDTNQISGSIPAELGKLKKLTVFFAWQNKLEGSIPSELGGCASLEALDLSYNTLTDGLPPGLFQLQNLTKLLLISNHLSGPIPQEIGTCSSLIRLRLLNNQIGGEIPRELGFLSNLNFLDLSENNLTGLVPVELGNCKELQMLNLSNNSLSGVLPRSLSSLTRLEVLDASLNHFSGEIPANIGQLSSLIRLILSRNSFSGSIPSSLGLCSSLQLLDLSSNNLSGSIPPKLFDIEALDIALNLSHNALSGVIPPQVSSLNKLSALDLSHNKLEGDLVALSGLENLVSLNISFNKFTGYLPDIKLFHQLSPTDLEGNQGLCPSGRDSCFISNSAMAKAQNESDSKRAERIKLGIGLLSAFTIALAIFGILTVVRAKKMAQDDNDSEMGGDSWPWQFTPFQKLNFSIDQVLKCLVDSNMIGKGCSGVVYRAELENGDVIAVKKLWPTTMAARYDCQRDKLAVHGRGVRDSFSAEVKTLGSIRHKNIVRFLGCSWNRNTRLLMYDYVPNGSLGSLLHERSGGNCLEWDIRYRILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGPDFEPYIADFGLAKLVDEGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGSEVLDPSLCARPAPEIEEILQTLGVALLCVNASPEDRPTMKDVAAMLKEIRQEREEYMKVDVLLHRSSANEEDNNTNNHSSEEPRGDTMKQSYPVNSNNTSFSASLLVSPSSSNTKVTFK 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5247g00002 1157 Gene3D Transferase(Phosphotransferase) domain 1 891 1110 - -
Pral5247g00002 1157 SUPERFAMILY Protein kinase-like (PK-like) 786 1084 IPR011009 -
Pral5247g00002 1157 SUPERFAMILY L domain-like 493 708 - -
Pral5247g00002 1157 Gene3D Phosphorylase Kinase; domain 1 784 890 - -
Pral5247g00002 1157 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 483 1085 - -
Pral5247g00002 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 936 948 IPR008271 GO:0004672|GO:0006468
Pral5247g00002 1157 MobiDBLite consensus disorder prediction 1127 1157 - -
Pral5247g00002 1157 Gene3D Ribonuclease Inhibitor 209 408 IPR032675 -
Pral5247g00002 1157 MobiDBLite consensus disorder prediction 1103 1157 - -
Pral5247g00002 1157 FunFam Predicted protein 206 304 - -
Pral5247g00002 1157 PRINTS Leucine-rich repeat signature 504 517 - -
Pral5247g00002 1157 PRINTS Leucine-rich repeat signature 646 659 - -
Pral5247g00002 1157 Coils Coil 1077 1097 - -
Pral5247g00002 1157 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524
Pral5247g00002 1157 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 431 718 - -
Pral5247g00002 1157 FunFam Nuclear pore complex protein NUP107 45 205 - -
Pral5247g00002 1157 ProSiteProfiles Leucine-rich repeat profile. 648 670 IPR001611 GO:0005515
Pral5247g00002 1157 ProSiteProfiles Leucine-rich repeat profile. 359 382 IPR001611 GO:0005515
Pral5247g00002 1157 SUPERFAMILY RNI-like 223 539 - -
Pral5247g00002 1157 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 305 413 - -
Pral5247g00002 1157 Gene3D Ribonuclease Inhibitor 44 208 IPR032675 -
Pral5247g00002 1157 SMART serkin_6 799 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5247g00002 1157 Pfam Leucine rich repeat 334 394 IPR001611 GO:0005515
Pral5247g00002 1157 Pfam Leucine rich repeat 628 682 IPR001611 GO:0005515
Pral5247g00002 1157 Pfam Leucine rich repeat 502 562 IPR001611 GO:0005515
Pral5247g00002 1157 ProSiteProfiles Protein kinase domain profile. 799 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5247g00002 1157 SUPERFAMILY L domain-like 80 278 - -
Pral5247g00002 1157 Gene3D Ribonuclease Inhibitor 414 715 IPR032675 -
Pral5247g00002 1157 SMART LRR_typ_2 429 453 IPR003591 -
Pral5247g00002 1157 SMART LRR_typ_2 598 621 IPR003591 -
Pral5247g00002 1157 SMART LRR_typ_2 573 597 IPR003591 -
Pral5247g00002 1157 SMART LRR_typ_2 357 381 IPR003591 -
Pral5247g00002 1157 SMART LRR_typ_2 669 691 IPR003591 -
Pral5247g00002 1157 SMART LRR_typ_2 164 188 IPR003591 -
Pral5247g00002 1157 SMART LRR_typ_2 501 524 IPR003591 -
Pral5247g00002 1157 SMART LRR_typ_2 525 548 IPR003591 -
Pral5247g00002 1157 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 891 1102 - -
Pral5247g00002 1157 SMART LRR_sd22_2 357 383 - -
Pral5247g00002 1157 SMART LRR_sd22_2 646 671 - -
Pral5247g00002 1157 SMART LRR_sd22_2 164 185 - -
Pral5247g00002 1157 SMART LRR_sd22_2 501 522 - -
Pral5247g00002 1157 Pfam Protein kinase domain 802 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5247g00002 1157 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 782 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5247g00002 Pral-Chr5247 14575 18248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5247g00002 44 1100 Receptor kinase-like Gene Family AT5G56040 47.201 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral5247g00002 Pkinase 4.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5247g00002 - - gmx:100794698 1662.51