Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5247g00001 ATGGCCCTGGCACAAAATCCGGAGTCTTTCTCTCAAACAAGGGGCCGGGCTCCAAAAACTGCCTCCTTCTCCCTCATAAACCTCCCTCTTCAGCCACTCTCTCCTTCTCTCTCACTTCATGCTTTGTATTTTATTGAGCGAAACTCCCAAACCCGTGGTAATATAGCCATGGAGGAAGAAAACGCCTTGGATGTTAACAAAACTGAGATCTGGCTTCAAGATGAACAAGACGATCTTCTTGGTGTGAATGATGTCTCCATGTTTTATGCTGATTTTCCTCCTCTTCCAGATTTTCCATGCATGTCATCCTCTTCGTCATCTTCCTCAACTCCAGCACTGCAAGTCAAGACCACGACGTGCTCTACAACATCTTCATCCTCCACCGCTACATCATCATCGTCCTCTGCCGTGTCATGGGCAGTTCTGAAGTCCGATGCCGAAGATAATCTTCGGGTGGAGGAGCAGCCGCCGCCACCACTAGCAACTTTGTCCTCCGCCGCTTCCACAGAGATCCCTTTACCGCCTAACGATTGTGCTGTCGAGATAGAGGAGCCTTTTCCGTACTTGGACATGTTAGAGATCAACGATTTTTTCGACCCGGCATTAGTTTTTCAAGACGAGGATTGCCCATTAGAAGAATATCCCCAGAATCAGATAGAGCGGGAGCAGGAACAACATGCAATTACACTGCTGCAGCAATCAGAGGATCAAGATCGGCATGTGCTCTTTAATGATAATAACTACGAAGAAGAGATTCAAGGAAAAGGAGGAAACCCAGATGGGGAAATGAGCGACGTGTTCTTGGAGTGGCTCAAAACGAACAAGGATAGCGTCTCTGCAAATGACTTGAGGAGCGTTAAGCTCAAAAAATCAACCATAGAGTGTGCTGCGAAGCGCTTAGGAGGAGGAAAAGAAGCCATGAAGCAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAACAAAAGCCGTTGTAATAAGGAGAGTGACATTAATAATAATGACAATGGTGCGCCTCCAAATTTCCTCACAAACCCTAGGTCTAATTCCAACCCTAATTTCTTTGGAATACCTCAGTCATGTCCATGGGTCTCTCATCCTCAGCCTTATGGGACAGATCCGGCGACTATGGTAGCCGTGCCGCCGCCTTCTTATCCTTTGATTGGGTATCCGGGTGACCCATATTCAAATGGAGCTTCGAATAATATCAATTCCTACCAACCTGCTATTACGGAATACAAAATGTTGGAAGCAGCTCATTCATGGCCTCCATCTCAGTTCACCATTGCTCCCCACTGCAACCAGTCATCATATGGGGACAATAATGTCCACCAGGCTGGCCCACCAGTAGCGGCGGGATTTGACGGCTATGTGAATCAGTATTCATATCATTATTTTCAAGGCATGGCGGCGGGTGATAAGTTAATGAGGTTAGGCCCCTCGGCGACCAAAGAAGCAAGGAAAAAGAGGATGGCGAGGCAGAGAAAGTTTTTGTCTCATCATAGGAGCCAGAAACACCATAGCCAACTACAGAATCATGATAATAATGACCCGCTTGCAAGATTGGGACGTGATTATAATTGCAACGGAGGTTCTGCGAATCCGGCCAATTGGGCGTACTGGGGGGCACTGGCCGGAGGAGCAGCTTCCGTGGTTCCAGTCGTTCCAGCTGAAACCCGGCCGGCTCTGGATCGAACAGCCATGCAAGCTCAGAATTATCAAACCAGTGTCGCATCGACAGATCAAAGGCGTCAGGGATTGAAGACAGAGAAGAACCTGAAGTTTCTTCTTCAAAAGGTGTTGAAGCAAAGTGACGTTGGTAGCTTGGGGAGAATTGTGCTGCCAAAAAAAGAGGCAGAAACCCACTTGCCAGAATTAGAGGCGAGAGATGGCATTTCTATAGCAATGGAAGACATTGGAACTTGTCGTGTTTGGAACATGCGCTACAGATACTGGCCAAACAACAAAAGCAGGATGTATCTGCTCGAGAATACTGGAGATTTCGTGAAGGCCAATGGACTGCAAGAGGGAGACTTCATAGTGTTGTACTCAGATGTCAAGTGTGGCAAATTTTTGATAAGAGGGGTGAAAGTAAGGCAAGCAGGGGGAGTGGCGAAAGCAGATCAGAGCAAGAAAGGAGGAAAAACGCATCAGAAAAACCTGGCGGCTGCTAATAATGAGGCGCCCTCTCCATCGTCGCCTCTGAAAAGATTAGAAAGGAAATAA 2238 0.471 MALAQNPESFSQTRGRAPKTASFSLINLPLQPLSPSLSLHALYFIERNSQTRGNIAMEEENALDVNKTEIWLQDEQDDLLGVNDVSMFYADFPPLPDFPCMSSSSSSSSTPALQVKTTTCSTTSSSSTATSSSSSAVSWAVLKSDAEDNLRVEEQPPPPLATLSSAASTEIPLPPNDCAVEIEEPFPYLDMLEINDFFDPALVFQDEDCPLEEYPQNQIEREQEQHAITLLQQSEDQDRHVLFNDNNYEEEIQGKGGNPDGEMSDVFLEWLKTNKDSVSANDLRSVKLKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKSRCNKESDINNNDNGAPPNFLTNPRSNSNPNFFGIPQSCPWVSHPQPYGTDPATMVAVPPPSYPLIGYPGDPYSNGASNNINSYQPAITEYKMLEAAHSWPPSQFTIAPHCNQSSYGDNNVHQAGPPVAAGFDGYVNQYSYHYFQGMAAGDKLMRLGPSATKEARKKRMARQRKFLSHHRSQKHHSQLQNHDNNDPLARLGRDYNCNGGSANPANWAYWGALAGGAASVVPVVPAETRPALDRTAMQAQNYQTSVASTDQRRQGLKTEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISIAMEDIGTCRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFLIRGVKVRQAGGVAKADQSKKGGKTHQKNLAAANNEAPSPSSPLKRLERK 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5247g00001 745 MobiDBLite consensus disorder prediction 492 511 - -
Pral5247g00001 745 FunFam B3 domain-containing transcription factor FUS3 597 712 - -
Pral5247g00001 745 Gene3D - 591 706 IPR015300 -
Pral5247g00001 745 ProSiteProfiles B3 DNA-binding domain profile. 601 703 IPR003340 GO:0003677
Pral5247g00001 745 Pfam B3 DNA binding domain 602 697 IPR003340 GO:0003677
Pral5247g00001 745 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 266 716 IPR044800 GO:0003700
Pral5247g00001 745 MobiDBLite consensus disorder prediction 487 522 - -
Pral5247g00001 745 CDD BfiI_C_EcoRII_N_B3 599 700 - -
Pral5247g00001 745 SMART B3_2 601 701 IPR003340 GO:0003677
Pral5247g00001 745 MobiDBLite consensus disorder prediction 151 176 - -
Pral5247g00001 745 SUPERFAMILY DNA-binding pseudobarrel domain 600 696 IPR015300 -
Pral5247g00001 745 MobiDBLite consensus disorder prediction 708 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5247g00001 Pral-Chr5247 9127 13025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5247g00001 61 734 B3 DNA Binding Superfamily AT3G24650 44.228 1.16e-148 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral5247g00001 B3 1.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5247g00001 K09287 - gmx:100795226 662.144