Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5246g00053 ATGCAAATTATAGGTGGTAATATAGCCATGGAGGAAGAAAACGCCTTGGATGTTAACAAAACTGAGATCTGGCTTCAAGATGAACAAGACGATCTTCTTGGTGTGAATGATGTCTCCATGTTTTATGCTGATTTTCCTCCTCTTCCAGATTTTCCATGCATGTCATCCTCTTCGTCATCTTCCTCAACTCCAGCACTGCAAGTCAAGACCACGACGTGCTCTACAACATCTTCATCCTCCACCGCTACATCATCATCATCGTCCTCTGCCGTGTCATGGGCAGTTCTGAAGTCCGATGCCGAAGATAATCTTCGGATGGAGGACAGCCGCCGCCGCCACCGCACTAGCAACTTTGTCCTCCGCCGCTTCCACAGAGATCCCTTTACCGCCTACGATTGTGCTGTCGAGATAGAGGAGCCTTTTCCGTACTTGGACATGTTAGAGATCAACGATTTTTTCGACCCGGCATTAGTTTTTCAAGACGAGGATTGCCCATTAGAAGAATATCCCCAGAATCAGATAGAGCGGGAGCAGGAACAACATGCAATTACACTGCTGCAGCAATCAGAGGATCAAGATCGGCATGTGCTCTTTAATGATAATAACTACGAAGAAGAGATTCAAGGAAAAGGAGGAAACCCAGATGGGGAAATGAGCGACGTGTTCTTGGAGTGGCTCAAAACGAACAAGGATAGCGTCTCTGCAAATGACTTGAGGAGCGTTAAGCTCAAAAAATCAACCATAGAGTGTGCTGCGAAGCGCTTAGGAGGAGGAAAAGAAGCCATGAAGCAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAACAAAAGCCGTTGTAATAAGGAGAGTGACATTAATAATAATGACAATGGTGCGCCTCCAAATTTCCTCACAAACCCTAGCTCTAATTCCAACCCTAATTTCTTTGGAGTACCTCAGTCATGTCCATGGGTCTCTCATCCTCAGCCTTATGGGACAGATCCGGCGACTATGGTAGCCGTGCCGCCGCCTTCTTATCCTTTGATTGGAATGTTGGAAGCAGCTCATTCATGGCCTCCATCTCAGTTCACCATTGCTCCCCACTGCAACCAGTCATCATATGGGGACAATAATGTCCACCAGGCTGGCCCACCAGTAGCGGCGGGATTTGACGGCTATGTGAATCAGTATTCATATCATTATTTTCAAGGCATGGCGGCGGGTGATAAGTTAATGAGGTTAGGCCCCTCGGCGACCAAAGAAGCAAGGAAAAAGAGGATGGCGAGGCAGAGAAAGTTTTTGTCTCATCATAGGAGCCAGAAACACCATAGCCAACTACAGAATCATGATAATAATGACCCGCTTGCAAGATTGGGACGTGATTATAATTGCAACGGAGGTTCTGCGAATCCGGCCAATTGGGCGTACTGGGGGGCACTGGCCGAGGAGGCAGCTTCCGTGGTTCCAGTCGTTCCAGCTGAAACCCGGCCGGCTCTGGATCGAACAGCCATGCAAGCTCAGAATTATCAAACCAGTGTCGCATCGACAGATCAAAGGCGTCAGGGATTGAAGACAGAGAAGAACCTGAAGTTTCTTCTTCAAATGTTGAAGCAAAGTGACGTTGGTAGCTTGGGGAGAATTGTGCTGCCAAAAAAAGAGGCAGAAACCCACTTGCCAGAATTAGAGGCGAGAGATGGCATTTCTATAGCAATGGAAGACATTGGAACTTGTCGTGTTTGGAACATGCGCTACAGATACTGGCCAAACAACAAAAGCAGGATGTATCTGCTCGAGAATACTGGAGATTTCGTGAAGGCCAATGGACTGCAAGAGGGAGACTTCATAGTGTTGTACTCAGATGTCAAGTGTGGCAAATTTTTGATAAGAGGGGTGAAAGTAAGGCAAGCAGGGGTGGCGAAAGCAGATCAGAGCAGAAAGGCGGAAAAACGCATCAGAAAAACCTGGCGGCTGCTAATAATGAGGCGCCCTCTCCATCGTCGCCTCTGA 2001 0.4738 MQIIGGNIAMEEENALDVNKTEIWLQDEQDDLLGVNDVSMFYADFPPLPDFPCMSSSSSSSSTPALQVKTTTCSTTSSSSTATSSSSSSAVSWAVLKSDAEDNLRMEEXSRRRHRTSNFVLRRFHRDPFTAYDCAVEIEEPFPYLDMLEINDFFDPALVFQDEDCPLEEYPQNQIEREQEQHAITLLQQSEDQDRHVLFNDNNYEEEIQGKGGNPDGEMSDVFLEWLKTNKDSVSANDLRSVKLKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKSRCNKESDINNNDNGAPPNFLTNPSSNSNPNFFGVPQSCPWVSHPQPYGTDPATMVAVPPPSYPLIGMLEAAHSWPPSQFTIAPHCNQSSYGDNNVHQAGPPVAAGFDGYVNQYSYHYFQGMAAGDKLMRLGPSATKEARKKRMARQRKFLSHHRSQKHHSQLQNHDNNDPLARLGRDYNCNGGSANPANWAYWGALAEEAASVVPVVPAETRPALDRTAMQAQNYQTSVASTDQRRQGLKTEKNLKFLLQKXLKQSDVGSLGRIVLPKKEAETHLPELEARDGISIAMEDIGTCRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFLIRGVKVRQAGVAKADQSRKAEKRIRKTWRLLIMRRPLHRRL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5246g00053 668 SMART B3_2 532 632 IPR003340 GO:0003677
Pral5246g00053 668 Pfam B3 DNA binding domain 533 628 IPR003340 GO:0003677
Pral5246g00053 668 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 222 643 IPR044800 GO:0003700
Pral5246g00053 668 MobiDBLite consensus disorder prediction 423 442 - -
Pral5246g00053 668 MobiDBLite consensus disorder prediction 284 309 - -
Pral5246g00053 668 ProSiteProfiles Ig-like domain profile. 46 137 IPR007110 -
Pral5246g00053 668 MobiDBLite consensus disorder prediction 290 309 - -
Pral5246g00053 668 SUPERFAMILY DNA-binding pseudobarrel domain 531 628 IPR015300 -
Pral5246g00053 668 MobiDBLite consensus disorder prediction 416 462 - -
Pral5246g00053 668 CDD BfiI_C_EcoRII_N_B3 542 631 - -
Pral5246g00053 668 Gene3D - 522 640 IPR015300 -
Pral5246g00053 668 ProSiteProfiles B3 DNA-binding domain profile. 532 634 IPR003340 GO:0003677
Pral5246g00053 668 FunFam B3 domain-containing transcription factor FUS3 528 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5246g00053 Pral-Chr5246 378159 380856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5246g00053 3 656 B3 DNA Binding Superfamily AT3G24650 43.654 1.01e-145 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral5246g00053 B3 3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5246g00053 K09287 - gmx:100795226 609.372