Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5246g00039 ATGGCTGAATTGAAATCAGAGGAGTGTTGTCTAGAGAATAAGCAATCTACTGCTGCCTCTACCTCCTCTATCTCTGAAGGCAGTGCCAGTGCTATCCACAAGTCCCCGGGAAGATGTAGCCCAGCATCAACATCACCCTCCCATCGGAGGACCACTGGCCCCATCAGGCGTGCAAAGGGAGGTTGGACAGCCCAGGAGGACGAGACATTGAGGAATGCTGTTGCAGCTTTCAAGGGCAAGAGTTGGAAGAAAATAGCTGAGTCTTTTCCTGATAGGTCAGAAGTGCAATGTCTGCACAGATGGCAAAAGGTTCTTAATCCTGAACTTGTTAAAGGCCCTTGGACTCCTGAGGAGGATGACAAAATTGTTGAACTGGTATCAAAATATGGGCCAGCAAAATGGTCTATGATTGCCAAATCTTTGCCTGGTCGCATTGGGAAACAATGTCGAGAGCGATGGCACAATCATCTTAATCCTGAAATAAAGAAGGACGCCTGGACTTTGGAGGAAGAACTGGCCCTCATGAATGCTCATCGCATACATGGGAACAAATGGGCTGAAATAGCTAAGGTTTTGCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTGAAAAAAAAATTAGAATTTTATTTAGCTACAGGAAACCTTCCACCAATCCAAAAGAACAGTGCACAAGGTGGTGTGAAAGATACAATAAGACGCTACGCTAGTAAAACAGTACATGCTTGCTCAAATAAAGTATTAGATGCAGCTGCTGATACATCATCAGAAAATACAGACAATACTAAAGATGGCAGTGGAAAGAATGAACTGGAGTCCTTCACAACAGTGAGAGAGTTTGGTAATTCTCTGAGCGTTCCTGCAAATGAAGGTACTGATTCTGACTTTGTAGAATGGAAGCCCAGATCATCTAATCCAGATCTTGGCTACAGCAACTCAGAACCAGAGTCAAGGGATAATTTTGGATTGACCGGTGACCTAAAATTGGATAAGACTCGTCTGAATGGCAAGCATACAGTTGGGAATTTTGTGAATAATGGTGAAATGAGTAGTGGCAGGCTAATTGGTACGTCTTCACAGGATAGTCCAGCCTCTGGTTCATTGTGTTATGAACCTCCATTGTTGGAGAGCTCAGTTCCGTTAGATTCCCTTTGTTTAAGTATGTATTGCCTGCAGAACGAGTACAATGCTACTCCAGTGATGTCACCTGTTGGTTTCTTCACTCCACCTTGCTTGAAGGGCAGTGAATTATGCACAGAGACTCCTGAATCAATATTGAAAATGGCTGCTAAAACTTTCCCATATACTCCTTCCATATTGAGGAAGAGAAAAAATGTAGTCCAAGCACATGTTACTCCTTGTAAAAATGTGAAAGTGGATGATGGATTTCATACTTCTAATGAAGAGGAGAAAGCCAAGTATAATGCTGGTTCTGGGCATGGTGAGCTATCCAAGAGGCCAGCAGGGGATGGCATTCTCAATAATAAGGCTTTTAATGCTTCTCCTCCTTACCGGTTAAGATTCAAGCGAAAAGCATTTGCTAAGTCTGTGGAGAAACAACTTGAGTTTGCTTTTGATAAAGAGAAGCATGATGTCAAAAAATTGGAAAAATCTGCTGCTAGGAGCACTGCCATGGCTGGAGATTGTTTACCTGAAACAAAAGTGGCAGTGACCTAG 1692 0.4297 MAELKSEECCLENKQSTAASTSSISEGSASAIHKSPGRCSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAAFKGKSWKKIAESFPDRSEVQCLHRWQKVLNPELVKGPWTPEEDDKIVELVSKYGPAKWSMIAKSLPGRIGKQCRERWHNHLNPEIKKDAWTLEEELALMNAHRIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLEFYLATGNLPPIQKNSAQGGVKDTIRRYASKTVHACSNKVLDAAADTSSENTDNTKDGSGKNELESFTTVREFGNSLSVPANEGTDSDFVEWKPRSSNPDLGYSNSEPESRDNFGLTGDLKLDKTRLNGKHTVGNFVNNGEMSSGRLIGTSSQDSPASGSLCYEPPLLESSVPLDSLCLSMYCLQNEYNATPVMSPVGFFTPPCLKGSELCTETPESILKMAAKTFPYTPSILRKRKNVVQAHVTPCKNVKVDDGFHTSNEEEKAKYNAGSGHGELSKRPAGDGILNNKAFNASPPYRLRFKRKAFAKSVEKQLEFAFDKEKHDVKKLEKSAARSTAMAGDCLPETKVAVT 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5246g00039 563 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Pral5246g00039 563 SMART sant 110 159 IPR001005 -
Pral5246g00039 563 SMART sant 58 107 IPR001005 -
Pral5246g00039 563 SMART sant 162 210 IPR001005 -
Pral5246g00039 563 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Pral5246g00039 563 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Pral5246g00039 563 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Pral5246g00039 563 MobiDBLite consensus disorder prediction 37 51 - -
Pral5246g00039 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Pral5246g00039 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Pral5246g00039 563 FunFam Transcriptional activator Myb isoform A 111 163 - -
Pral5246g00039 563 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Pral5246g00039 563 PANTHER MYB PROTEIN-RELATED 59 144 - -
Pral5246g00039 563 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Pral5246g00039 563 CDD SANT 113 157 IPR001005 -
Pral5246g00039 563 MobiDBLite consensus disorder prediction 1 63 - -
Pral5246g00039 563 MobiDBLite consensus disorder prediction 11 30 - -
Pral5246g00039 563 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Pral5246g00039 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Pral5246g00039 563 MobiDBLite consensus disorder prediction 284 325 - -
Pral5246g00039 563 MobiDBLite consensus disorder prediction 310 324 - -
Pral5246g00039 563 CDD SANT 62 105 IPR001005 -
Pral5246g00039 563 Gene3D - 58 109 - -
Pral5246g00039 563 Gene3D - 110 163 - -
Pral5246g00039 563 FunFam Transcriptional activator Myb isoform A 58 110 - -
Pral5246g00039 563 CDD SANT 165 208 IPR001005 -
Pral5246g00039 563 FunFam Transcription factor MYB3R-2 164 228 - -
Pral5246g00039 563 Gene3D - 164 234 - -
Pral5246g00039 563 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5246g00039 Pral-Chr5246 284656 291094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5246g00039 2 553 MYB Transcription Factor Family AT3G09370 47.764 1.14e-150 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5246g00039 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5246g00039 K09422 - gmx:100793280 778.859