Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5246g00035 ATGAAGGAGAGGCAACGTTGGAGAGCTGAGGAGGACGCATTATTACGTGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCCCAGCGCATGAACACGCCCCTTAACAGGGATGCCAAATCCTGCTTAGAAAGGTGGAAGAACTATCTCAAGCCTGGCATCAAGAAGGGATCTCTCACTGAAGAAGAACAACGACTTGTCATCCGACTCCAAGCAAAGCACGGCAACAAATGGAAGAAAATTGCTGCAGAAGTCCCAGGTCGCACTGCTAAGAGGTTAGGTAAGTGGTGGGAAGTATTTAAAGAGAAGCAGCAGAGGGAAAAGAAAGAAATCAATAAAACAGTTGACCCAATTGACGACACTAAATACGATCATATACTTGAGACTTTTGCTGAGAAGCTGGTGAAAGAACGCCCTTCTCCATCCTACCTTATGGCTGCTTCAAATGGAGCTTTTATTCACACTGATGCATCAGCTCCTGCGTCAGCTATGCTTCCTCCATGGCTTTCAAACCCAAATAACTCTACAACTATTAGGCCACCTTCCCCTTCTGTGACGCTAAGTCTCTCTTCCTCAGCTGTAGCTGCACCACCTCCTTTTCAATGGCTACAACCTGAGAGAGCGCCAGAGAATGCTTCTCTTGTTATGGGGAATGTAACACCTCACGGAACTAATCCGGCTTTTGGTGATAACCTGCTACTACCTGAGCTAATTGAGTGCTGTAAAGAGTTGGAAGAGGGGCATAGGGCATTGTCATCCCATCGGAAAGAAGCAGCATGGAGGTTAAGGCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCATGTCGGAGGCGGGAGAAGATGGAAGAGATTGAGGTGAAGATTAAAGCTCTCCGGGAAGAAGAGAAGGCTGCTTTGGATAGAATTGAGGCTGAGTACCGGGAGCAGCTAGCTGGACTGAGAAGAGATGCAGAAACCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCAAAGCACTCAAAGCTTAATAAGTTTCTGGAGCAGATGGGGTGCAGAACCAGGCTTGCTGAGCAAAATGGAAGATGA 1074 0.4767 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKEINKTVDPIDDTKYDHILETFAEKLVKERPSPSYLMAASNGAFIHTDASAPASAMLPPWLSNPNNSTTIRPPSPSVTLSLSSSAVAAPPPFQWLQPERAPENASLVMGNVTPHGTNPAFGDNLLLPELIECCKELEEGHRALSSHRKEAAWRLRRVELQLESEKACRRREKMEEIEVKIKALREEEKAALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHSKLNKFLEQMGCRTRLAEQNGR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5246g00035 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Pral5246g00035 357 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Pral5246g00035 357 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Pral5246g00035 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 354 - -
Pral5246g00035 357 CDD SANT 6 53 IPR001005 -
Pral5246g00035 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Pral5246g00035 357 SMART sant 3 55 IPR001005 -
Pral5246g00035 357 SMART sant 58 106 IPR001005 -
Pral5246g00035 357 Coils Coil 284 326 - -
Pral5246g00035 357 Gene3D - 4 58 - -
Pral5246g00035 357 FunFam MYB-related transcription factor 4 58 - -
Pral5246g00035 357 CDD SANT 63 104 IPR001005 -
Pral5246g00035 357 Gene3D - 62 120 - -
Pral5246g00035 357 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Pral5246g00035 357 Pfam Myb-like DNA-binding domain 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5246g00035 Pral-Chr5246 259288 263957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5246g00035 1 348 MYB Transcription Factor Family AT2G37630 67.397 9.31e-167 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5246g00035 Myb_DNA-bind_6 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5246g00035 K09422 - jre:108984614 578.17