Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5246g00030 ATGGGTGATCCGTACCCTTATGGGCTGCTCGATTTCCAGCAACTCATAGCTGGAAGAAGCAGCCACCATGATTTGCCCGAGCCACCGTGTCTGGGCGGTGCCACTGCCGGTGCTGCAGCAGTGCCGGCTGCTCCAATACCTAACAACTATAACGTCGTTTTCTCTCATGGGTTTGCTACTACCTTCGCTCCTTCAAATCATCATCGAGACTGTTCCTCAAGTGTTGTCAATAATATTAGTCCCACCTCCACAAACCCTACTGTTACTGCTTCTGCTTTAGCAAATCATGGCACTACCACTGCATTCTGTAGCAGCAGCAGCAGCAGCATGGAAGTTGCAGAAAAGGGATGGCTTGGATTTGATGCTGCGAACAATAGATGGCCTAGACAAGAGACTCTTTTGCTCTTAGAGATCAGATCTCGTCTTGATTCGAAGTTCAGAGAGACCAATCACAAAGCTCCCTTATGGAATGAAATCTCTAGGATAATGAGCGAAGAATATGGGTACCAAAGAAGTGGAAAAAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGGAAAGCAGGAAGACAAGATGGGAAACACTACAGATTCTTTCGTCAGCTTGAGGCAATATGTGGAGAATCAACCAGGAACATTACTACTTCTGCTAATTACCAACCTCCATTGATGACCTTCACAGATGGTGATGAACACATTAACAACAACAACAACAACATCAAGTACTGCTCAAAGAGCCTTAGCCTGTCAAACAATTCATCAGACCAATTCGAGACATCCTCATGCGAAAACAATGATGACAAGGACCTGTCAGCCATTGCCTATGGGATGAAGCAAAAGCATGTGGAGATAGACCGCCAAATTAGACACAGTGGAGTGAGGGAGAGGAAGAGCTTGAGAGGTGAGGTTGAAGAGATTGTGGACTCTAACATGAGGAAGATCATAGAGAGTCAAGACGCTTGGATGGAGAAGATGATGAGTGTGGTTGAGCACAGAGAGCAGGAAATGATGTACAAGGAAGAAGAGAGGAAAAAAGATTCAATAAAATTCGATCAAGAAGTGTATCAACTCTGGGCTAAAGAGAGAGCTTGGGTTGCGACTAGAGACACTGCATTAATGGAGGTCGTGAAGAAACACTTGGGAAAAGAGATAACAACAGATCATCATCAGCCTATGGTTGAGGAATACGAAGAAGAACCACAAGCCAAGAATAAGAACAATGGTGAGCGCGGACAGAACTGGAGATTTCAAATCTGA 1278 0.4444 MGDPYPYGLLDFQQLIAGRSSHHDLPEPPCLGGATAGAAAVPAAPIPNNYNVVFSHGFATTFAPSNHHRDCSSSVVNNISPTSTNPTVTASALANHGTTTAFCSSSSSSMEVAEKGWLGFDAANNRWPRQETLLLLEIRSRLDSKFRETNHKAPLWNEISRIMSEEYGYQRSGKKCKEKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEAICGESTRNITTSANYQPPLMTFTDGDEHINNNNNNIKYCSKSLSLSNNSSDQFETSSCENNDDKDLSAIAYGMKQKHVEIDRQIRHSGVRERKSLRGEVEEIVDSNMRKIIESQDAWMEKMMSVVEHREQEMMYKEEERKKDSIKFDQEVYQLWAKERAWVATRDTALMEVVKKHLGKEITTDHHQPMVEEYEEEPQAKNKNNGERGQNWRFQI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5246g00030 425 ProSiteProfiles Myb-like domain profile. 119 184 IPR001005 -
Pral5246g00030 425 Pfam Myb/SANT-like DNA-binding domain 125 212 IPR044822 -
Pral5246g00030 425 Gene3D - 127 189 - -
Pral5246g00030 425 CDD GT1 125 191 - -
Pral5246g00030 425 PANTHER FI21293P1 99 389 - -
Pral5246g00030 425 FunFam trihelix transcription factor PTL-like 127 189 - -
Pral5246g00030 425 MobiDBLite consensus disorder prediction 403 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5246g00030 Pral-Chr5246 209528 212262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5246g00030 126 416 Trihelix Transcription Factor Family AT5G03680 45.277 3.42e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral5246g00030 Myb_DNA-bind_4 5.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5246g00030 - - gmx:100787750 399.823