Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5246g00026 ATGGGTGTGAACTGGAGCAATCGGATCGAGGCCGTGAGTCCTTCACGTACAGGATTTATTTCTAGAAGTGTCAGCAGGGATGGCTGTGACACGAGCTCAAACAGCAGGAACCCATCATCCTCCATGCCCATAACCCCTCGGAGTGAGGGCGAGATCTTACAGTCTTCCAATTTGAAGAGCTTCAGCTACAGTGAACTTAAAACAGCCACAAGAAATTTTCGCCCGGACAGTATCTTAGGAGAGGGCGGGTTTGGTTTAGTTTTTAAGGGGCGGATTGATGAGCACTCCCTTGCTGCTACCAAGCCAGGGACTGGCATAGTTATTGCTGTGAAGAGACTGAACCAAGATGGTTTACAGGGTCACAAGGAATGGCTGGCTGAAATCAACTACCTTGGTCAACTGCGTCATCCTAATCTTGTCGAACTGATAGGATACTGCTTGGAAGATGAGCATCGACTTCTAGCTTATGAATTTATGTCTGGGAGCAGTGTGGAGAATCATCTTTTCAGAAGAGGATCTCATTTGCCGCCACTGTCCTGGTCTTTGCGAATGAAAATAGCTCTTGGGGCTGCCAAGGGTCTTGCATTTCTCCATGGCACAGAACCTAAAGTCATATACCGTGACTTCAAGACTTCTAATATTCTTCTTGATAAAGATTATAATGCCAAACTTTCTGACTTTGGGTTGGCCAGAGATGGGCCAACAGGTGACAAGAGTCACGTCACAACTAGAGTCATGGGTACTTATGGATATGCAGCGCCAGAATATCTTGAAACAGGTCACCTTACTGCCAAGTGTGATGTATATGGTTTTGGTGTAGTTCTCCTGGAAATGTTATCCGGAAGACGGGCCATAGACAACAACCTGCCATCCGGAGAGCGTGAACTTGTGAAGTGGGCAAGACCTCATCTATATAATAAACGACGGTGTTTTCGTGTCATCGATGCCCGTCTTGAAGGTCAGTACTCGCCGAGGGGAGCTAAAAGAGCAGTAACCCTTGCAGGTCAGTGTCTTCTTGCGCAACCTAAATTCAGGCCAGACATGGACGAGGTAGTAAGGGCATTGGAGCAGCTTCAGGATTCAGAGGACATGGCAAAAAGTGCTAATGAGGAAGAAAGTGCATCAGAAGGAAACCAACTGGAGGCTCATGTTGATGGTACTAGAGCTGCACCTCCCCGTCTTGTTCTGGACACCACTGCCACAAATGGTGCTTCCATAAACCCAGAATATGAAGAATGGTTCTCTGTTCATCGGATGCTTGCTTTAGGCCAGCTCAGACTGAAAAATAAGCCTGTAACAAGCCACAAACCAGGTTCAGGCAATAAGCTCCAAAAGACCTGTTTCCACCCCTACATGTCACAAGTTAGAGCTCAGCTGGTACATTGCAAGAATGCAAGGGATCTCTGGATTGGTGCTAGAGAGCTAACCTATCAGCTAATCTTAGCAGGTGCCCCTGTTCCCACTGAAGAACTCATTATGTACACTCTGAATGGTCTTGACTCGAAGTACAATGCCACTGTTATGAAGCGGATTGATCAACCCAATCTCACTTGGGTTGGGGCACAATCGGCCTTGTTGGCATTTGAAAGTCGCTTGGAGCAATTGAATCATTTCTCCTCCTTAACTACTCATCCTTCGGCCAACTTTGCTCAAAAAGATTCTGCTTCTGCTCAAAACACTCGTTTTTCTAAACCACCTCGTCGCCAATATGACTCTGACCGCAGGAATGATTGTTCCTTTCAATCTCCGTCTGTCTCTTATCCCAGACCATCTGCTTCTCCCCTTTTTGTTTAA 1794 0.4666 MGVNWSNRIEAVSPSRTGFISRSVSRDGCDTSSNSRNPSSSMPITPRSEGEILQSSNLKSFSYSELKTATRNFRPDSILGEGGFGLVFKGRIDEHSLAATKPGTGIVIAVKRLNQDGLQGHKEWLAEINYLGQLRHPNLVELIGYCLEDEHRLLAYEFMSGSSVENHLFRRGSHLPPLSWSLRMKIALGAAKGLAFLHGTEPKVIYRDFKTSNILLDKDYNAKLSDFGLARDGPTGDKSHVTTRVMGTYGYAAPEYLETGHLTAKCDVYGFGVVLLEMLSGRRAIDNNLPSGERELVKWARPHLYNKRRCFRVIDARLEGQYSPRGAKRAVTLAGQCLLAQPKFRPDMDEVVRALEQLQDSEDMAKSANEEESASEGNQLEAHVDGTRAAPPRLVLDTTATNGASINPEYEEWFSVHRMLALGQLRLKNKPVTSHKPGSGNKLQKTCFHPYMSQVRAQLVHCKNARDLWIGARELTYQLILAGAPVPTEELIMYTLNGLDSKYNATVMKRIDQPNLTWVGAQSALLAFESRLEQLNHFSSLTTHPSANFAQKDSASAQNTRFSKPPRRQYDSDRRNDCSFQSPSVSYPRPSASPLFV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5246g00026 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Pral5246g00026 597 MobiDBLite consensus disorder prediction 549 565 - -
Pral5246g00026 597 Pfam Protein kinase domain 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5246g00026 597 Gene3D Transferase(Phosphotransferase) domain 1 159 384 - -
Pral5246g00026 597 FunFam Serine/threonine-protein kinase PBS1 159 374 - -
Pral5246g00026 597 MobiDBLite consensus disorder prediction 20 50 - -
Pral5246g00026 597 SUPERFAMILY Protein kinase-like (PK-like) 52 357 IPR011009 -
Pral5246g00026 597 PANTHER OS01G0588500 PROTEIN-RELATED 40 359 - -
Pral5246g00026 597 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5246g00026 597 Coils Coil 351 371 - -
Pral5246g00026 597 ProSitePatterns Protein kinases ATP-binding region signature. 79 111 IPR017441 GO:0005524
Pral5246g00026 597 Gene3D Phosphorylase Kinase; domain 1 48 158 - -
Pral5246g00026 597 FunFam Serine/threonine-protein kinase BIK1 40 158 - -
Pral5246g00026 597 MobiDBLite consensus disorder prediction 360 396 - -
Pral5246g00026 597 CDD STKc_IRAK 79 358 - -
Pral5246g00026 597 MobiDBLite consensus disorder prediction 549 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5246g00026 Pral-Chr5246 184075 193362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5246g00026 51 355 Glycoside Hydrolase AT3G07070 50.000 1.33e-101 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pral5246g00026 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5246g00026 - - qsa:O6P43_016765 583.178