Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5246g00006 ATGGCTTCAGTGGGATCATCCTATTGGTGCTACAGATGCAATCAGTCTGTTAGGGTTCGAATTGGGGCTGAAGAAACCTTGCTTTGCCCTGATTGTGGGTCTGGCTTTATAGAAGAATTCAGGACTCGTACTCACTCTCCTTTCCATCGATTCCCGTCGCCATCAGTGTACGTCGACGACGAGTCTAGCTCCGAGCAAGGAGCTAGCCCTAGAATCCGCCGTGGCCCGAGGAACGCAGGCGATCGATCCCCTTTTAACCCAGTTATTGTCCTCAGTGGACCCGCCGATGGCGGTGGCGGTGGAAATGAAGGGGTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCACTTCCTGCAAGCGTCACTGAGTTCTTAATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGACTCATTTAGAAGTCACGGGAATCGGACGTTTACATCAAACTCCAGCATCAAAATCTGCAATTGAATCGATGCCCATAGTCAAGATTGTTGCCACACATGTTTCGGCGGAATCACATTGTGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGATGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCCGATTGTATCCTTCCATGGCTTTCAATTCGTAATTCATGTCCAGTTTGTCGCCATGAGTTACCTACTGAGATGCGTGGGAGTAGTAGTGGCAGAAACTCTCCCGTATCTGACGGTGGAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTACCTGGTGGCGGTTTTGCTGTAGGAAGGTTCACGGGTGGAAGAAGAGCTGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTGGGTGTTCCACGGAGGATATCTTGGGAAGCGAGTGTGAGGAGATCAAGGGAGACTCGGGGATTAGGTAGTGCTTTCCGGAACTTCTTCTCACACTTCGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGAACTGATTCAAATGTGAGCCGAAGAACTCGATCTAATACAATATTATCTAGATTCTCAAGAAGGCGCAACTAG 1098 0.4827 MASVGSSYWCYRCNQSVRVRIGAEETLLCPDCGSGFIEEFRTRTHSPFHRFPSPSVYVDDESSSEQGASPRIRRGPRNAGDRSPFNPVIVLSGPADGGGGGNEGVGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLHQTPASKSAIESMPIVKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSSGRNSPVSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWEASVRRSRETRGLGSAFRNFFSHFGWLRTSFSRSSRTDSNVSRRTRSNTILSRFSRRRN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5246g00006 365 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Pral5246g00006 365 CDD RING-H2_RNF126-like 187 228 - -
Pral5246g00006 365 MobiDBLite consensus disorder prediction 342 365 - -
Pral5246g00006 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 232 - -
Pral5246g00006 365 SMART ring_2 187 227 IPR001841 -
Pral5246g00006 365 SUPERFAMILY RING/U-box 167 234 - -
Pral5246g00006 365 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Pral5246g00006 365 MobiDBLite consensus disorder prediction 51 85 - -
Pral5246g00006 365 SUPERFAMILY RNA polymerase subunits 7 46 IPR029040 -
Pral5246g00006 365 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Pral5246g00006 365 Pfam Protein of unknown function (DUF1117) 256 360 IPR010543 -
Pral5246g00006 365 MobiDBLite consensus disorder prediction 231 251 - -
Pral5246g00006 365 Pfam Ring finger domain 186 228 IPR001841 -
Pral5246g00006 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Pral5246g00006 365 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5246g00006 Pral-Chr5246 37941 39760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5246g00006 126 242 C3H Transcription Factor Family AT5G01980 43.590 2.66e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5246g00006 K11982 - qsa:O6P43_016745 537.724