Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5245g00013 ATGGAATTTAACCGTCAAAGTACAAAGAAGTTATCTGAGCAGGTAAGATGGAGCCCGGAAGAATCTGGAGCCAGATCTTATACTTGTGCCTTCTGCAAGAGAGGATTCTCAAATGCTCAAGCCCTAGGAGGTCACATGAACATCCACAGAAGAGATAGAGCAAAGCTCAAACAATCATCTGAAGAAAACTTGCTTTCTCTGGACATCTCAATCAAGAACCCTAGTACTTGTACTTCTGATGATGATCAGCCTCCTCCTCCTCCTCCTTACAAGCCTTCTAATTCAGAAGAGAAGGTTTTGTTTCAGTGGGATTCTGAAACACTTCCTAATAATCCCTTTTTTGCTGGGAATAACGAGGAGAACAGTGAACTAGATCTTGAGCTTCGGTTAGGTCATCAACCGCATGAGGCCTCAACTTTGAACACCAGAGAATTTTTTTAA 441 0.4218 MEFNRQSTKKLSEQVRWSPEESGARSYTCAFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISIKNPSTCTSDDDQPPPPPPYKPSNSEEKVLFQWDSETLPNNPFFAGNNEENSELDLELRLGHQPHEASTLNTREFF 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5245g00013 146 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Pral5245g00013 146 PANTHER OS07G0101800 PROTEIN 14 94 - -
Pral5245g00013 146 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Pral5245g00013 146 Gene3D Classic Zinc Finger 4 81 - -
Pral5245g00013 146 MobiDBLite consensus disorder prediction 1 23 - -
Pral5245g00013 146 MobiDBLite consensus disorder prediction 52 98 - -
Pral5245g00013 146 MobiDBLite consensus disorder prediction 60 79 - -
Pral5245g00013 146 SUPERFAMILY beta-beta-alpha zinc fingers 23 53 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5245g00013 Pral-Chr5245 41431 41951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5245g00013 24 58 C2H2 Transcription Factor Family AT3G09290 85.714 1.94e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5245g00013 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5245g00013 - - gmx:100527901 136.732