Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5245g00012 ATGGAACAAGGTCAATGTTGGGTTTGGACCAAGAGAAAGCACTCATCTTTGAGCTCTTATAATGCTCTTGCTTCACCGAGTCACAACTTCACCTATGGCGATTCATGGGAAGAACAAGCTTTCGCAGAAGATGAGCGTCTTGGTGGGTGTATTTGGCCTCCAAGATCATACTCTTGCAGCTTTTGCAGCAGAGAGTTCAGGTCAGCCCAAGCTCTAGGAGGCCACATGAATGTTCACAGAAGAGATAGAGCTAGGCTAAAGCAACCCCCAAGTCCACAAAAACAAGATGAAACCAGTCTTGAATATCAAAATTCTCTCACATCTACTTCTTTGGCTTATTCCAACGCTAACCCTAATTCTGATCATCATCCCGAGGCTAAATTAGCCCCTCCATCTTTGATTCAAGAGAATTCCGCCCCACCATATGATTCTTGTATTTCATGGTCAAACTTTGCTGAACGAAAATTATATTCTCGAAAGGTCGATCTTATTGGATCTGGGGATGAGAAGATGTCCGAGATAGTAGGCACTGATTGTAATAAGGAAGAAGCTGATATTATGAGCTGCAAGAGGAGAAGAATAACAGATGATTCATCATCAATTCCATTCTCCTCAAAATCAATTCCAGTTGTTAATCGGCATGATCATATCAAGTCTCAGATGTTCGAGTTTATTAGTCCTAGTTCCAGTGAAGAACTAGATCTGGAGCTAAGGCTTGGTCACAGTCCTCCCAAGGTATAG 741 0.4238 MEQGQCWVWTKRKHSSLSSYNALASPSHNFTYGDSWEEQAFAEDERLGGCIWPPRSYSCSFCSREFRSAQALGGHMNVHRRDRARLKQPPSPQKQDETSLEYQNSLTSTSLAYSNANPNSDHHPEAKLAPPSLIQENSAPPYDSCISWSNFAERKLYSRKVDLIGSGDEKMSEIVGTDCNKEEADIMSCKRRRITDDSSSIPFSSKSIPVVNRHDHIKSQMFEFISPSSSEELDLELRLGHSPPKV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5245g00012 246 Gene3D Classic Zinc Finger 54 117 - -
Pral5245g00012 246 MobiDBLite consensus disorder prediction 73 102 - -
Pral5245g00012 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Pral5245g00012 246 SMART c2h2final6 57 79 IPR013087 -
Pral5245g00012 246 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Pral5245g00012 246 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pral5245g00012 246 PANTHER OS07G0101800 PROTEIN 33 243 - -
Pral5245g00012 246 MobiDBLite consensus disorder prediction 76 90 - -
Pral5245g00012 246 Pfam C2H2-type zinc finger 57 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5245g00012 Pral-Chr5245 34474 35214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5245g00012 1 246 C2H2 Transcription Factor Family AT5G06070 34.328 6.68e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5245g00012 zf-C2H2_6 9.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5245g00012 - - pcin:129291690 381.333