Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5244g00001 ATGGAGGAGGGTTTCGAACCTTACCATGTTCCTCAGCAGAGCCGGAGAGACAAGCTCAGGGTCGGCTTTCACAACCAACACTCTTCCCTGCCTGCGGCGGCGTGCGCCGGTTTGCTCCCGGTCTCCGACCCTTCCCTTATTCCCTCCGATCTGCTTACGTGCGCCAACAATAATCCTCAATCCTCCAATTTGCAAATAGACCCTGCAACTGTGCAAATTATCAACAACAACCCTTTTCTTAACTTTCCTCTCGCTCAAACCCTTCGCGCCGAGCCATTGTCTTTATCTCTCTCCTCCTCCCACAATCACTGTGCTCATCAAGCCAATCTTAACAGTAATCCCCCACTTGAGCTGAATCTTCAGAGGTATGATGGCGGCTCCGTGAGCATCCCGGCCAACGACGCCGTTTTGAGAAGCTCCGTCGTTCCGCTGGGGCCGTTCACGGGTTACGCTTCGGTGTTGAAGGGATCGAGGTTTCTGAGGCCGGCTCAGCAGTTATTGGAGGAGCTTTGCGACGTTGGGGGTCGTCAAATTTGCGCCGCAGAAAAGATGTCGGCGGATGCTTCGTTGATGGGACCTCCTCCGTTGTTGGAGAGCCTCGGCTCCGGCGATCCGCCGCCGACACTTGGGGATGGTGGGGAGGGTGGGAAGAAAAAGTCGAGACTGTTAACCATGCTTGATGAGGTGTACAGAAGGTACAGGCAGTACTATCAACAGATACAAGCAGTAGTAACGTCATTTGAGTATGTTTCAGGCCTGGGCAACGCGGCTCCTTATGTGATCTTGGCCATAAATGCCATGACCAAGCATTTCAAATGCTTGAAGAATGTGATCATGGACCAGCTTCAGTTCACTAATAAGGCTCATTTTCACAATATAAGCAACAAGAAGGATGAATCTCCAAGGTTTGGAAATGTTGACCATAGAGGAGTAGGACCTTACGGCCAAATTAGGGATACTCAGAACCCCGAATTACTAGGAAACCAACCGATCTGGCGACCTCAACGAGGACTCCCCGAACGTGCTGTGACTGTTCTTAGGGCATGGTTGTTTGAGCACTTTCTACACCCATATCCTACTGATACAGACAAGCTGATGCTGGCGAGACAGACTGGTTTGTCTCGTAGCCAGGTGTCAAACTGGTTCATTAATGCGAGAGTGAGGCTGTGGAAACCAATGGTTGAAGAAATACACATGCTAGAGACACGACAGTCCCAGAAGAATCATCAGAACACAGAAGATCACAACAAGAACAAGCCCAGCACTAGTGACAGGTTTCAAGATGATGCTCCTTTTAAACGCACCAGAAATTATGAACCTACGACTCATGATCATATGTCTGCAGCGACGAATCAGTTGCCTTGTAATGCAATAAGCAACGTTAATAATAATCAGGCATTAGGTGTTGGAACAGTGGCCAATAGCGTCTCCCTCACGCTGGGTCTCCACCAGAACAACGGCGGGCTTGCTCTATCTGAACCTTTTCCCATGAGTGAAGCTCTCCGTTTCGGCCTTGCCCTAGAAGTACCCAGTAACGAAGATTATGTAATAAGTGGTTCTGAATCGCAGAATCGGCATTATGGAAGAGACCAGGTGATTGGAGGGCAGCTTGTGCATGACTTTGTTGGCTAA 1632 0.4969 MEEGFEPYHVPQQSRRDKLRVGFHNQHSSLPAAACAGLLPVSDPSLIPSDLLTCANNNPQSSNLQIDPATVQIINNNPFLNFPLAQTLRAEPLSLSLSSSHNHCAHQANLNSNPPLELNLQRYDGGSVSIPANDAVLRSSVVPLGPFTGYASVLKGSRFLRPAQQLLEELCDVGGRQICAAEKMSADASLMGPPPLLESLGSGDPPPTLGDGGEGGKKKSRLLTMLDEVYRRYRQYYQQIQAVVTSFEYVSGLGNAAPYVILAINAMTKHFKCLKNVIMDQLQFTNKAHFHNISNKKDESPRFGNVDHRGVGPYGQIRDTQNPELLGNQPIWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLARQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQSQKNHQNTEDHNKNKPSTSDRFQDDAPFKRTRNYEPTTHDHMSAATNQLPCNAISNVNNNQALGVGTVANSVSLTLGLHQNNGGLALSEPFPMSEALRFGLALEVPSNEDYVISGSESQNRHYGRDQVIGGQLVHDFVG 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5244g00001 543 MobiDBLite consensus disorder prediction 402 442 - -
Pral5244g00001 543 Gene3D - 335 397 - -
Pral5244g00001 543 SUPERFAMILY Homeodomain-like 334 399 IPR009057 -
Pral5244g00001 543 Pfam Homeobox KN domain 349 388 IPR008422 GO:0003677|GO:0006355
Pral5244g00001 543 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 414 - -
Pral5244g00001 543 SMART prehox3 148 280 IPR006563 -
Pral5244g00001 543 SMART HOX_1 332 396 IPR001356 GO:0003677
Pral5244g00001 543 MobiDBLite consensus disorder prediction 402 441 - -
Pral5244g00001 543 Pfam Associated with HOX 153 278 IPR006563 -
Pral5244g00001 543 CDD homeodomain 332 393 IPR001356 GO:0003677
Pral5244g00001 543 FunFam BEL1-like homeodomain protein 9 335 397 - -
Pral5244g00001 543 ProSiteProfiles 'Homeobox' domain profile. 329 392 IPR001356 GO:0003677
Pral5244g00001 543 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5244g00001 Pral-Chr5244 11573 16315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5244g00001 1 543 Homeobox Transcription Factor Family AT5G02030 43.212 3.41e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral5244g00001 POX 8.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5244g00001 - - qsa:O6P43_016709 552.362