Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5234g00014 ATGGCAGCAGAACAACAAGAACCAGAAGCTCTCCTTCACACTAAGCTTCAACCAACAACTCCTTCTTCCTCCTCCTCCTCCTCCTCAAGCACCACAGAAGCCATTAATAGACACCATGAAGCTCAAGAAGCTCACAAAGAAGAGAAGCTGAGGAAGAAGAAGACGACGACCAGTAAGAACGAAACGGACATGGACGGGAAGCACCCAACTTACAGAGGCGTACGTATGCGTCAGTGGGGGAAATGGGTTTCAGAAATCAGAGAACCCAGAAAGAAATCCAGAATATGGCTTGGCACTTTTCCTACTGCAGAAATGGCGGCTCGAGCTCACGACGTCGCTGCTCTCAACATTAAAGGAAGCTCTGCTTTCCTCAACTTCCCGGAGCTAGCCACCGTGCTTCCTCGTCCGGCCAGTAACTCCCCAAAGGACGTCCAAGCCGCCGCCGCCAAAGCAGCCGCCATCAATTACCACATAAACCCTCAAGCAGCCGAGGCCGAGTCAGACGTCATGCAAGCCGACGCTCCGCCACTGTCAAGTTCGTCGTTAACGGACGACGATGACACTTTCTTCAACCTTCCCGATATCTTAAATCACGGTGGCGCCGACGAGTTTCAATACTCCTCGCTGTGGCTCCTAGCCGGCGCCGATTACAGAGACCCAGGTTTCCGGCTCGAGGAGCCATTTCTATGGGACTCCTAG 699 0.5308 MAAEQQEPEALLHTKLQPTTPSSSSSSSSSTTEAINRHHEAQEAHKEEKLRKKKTTTSKNETDMDGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALNIKGSSAFLNFPELATVLPRPASNSPKDVQAAAAKAAAINYHINPQAAEAESDVMQADAPPLSSSSLTDDDDTFFNLPDILNHGGADEFQYSSLWLLAGADYRDPGFRLEEPFLWDS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5234g00014 232 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700|GO:0006355
Pral5234g00014 232 MobiDBLite consensus disorder prediction 36 70 - -
Pral5234g00014 232 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Pral5234g00014 232 MobiDBLite consensus disorder prediction 1 70 - -
Pral5234g00014 232 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Pral5234g00014 232 MobiDBLite consensus disorder prediction 12 35 - -
Pral5234g00014 232 SUPERFAMILY DNA-binding domain 70 128 IPR016177 GO:0003677
Pral5234g00014 232 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Pral5234g00014 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 46 197 - -
Pral5234g00014 232 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
Pral5234g00014 232 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Pral5234g00014 232 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Pral5234g00014 232 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5234g00014 Pral-Chr5234 140616 141411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5234g00014 59 229 AP2-EREBP Transcription Factor Family AT2G44940 51.442 2.07e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5234g00014 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5234g00014 - - pcin:129299286 290.426