Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5232g00026 ATGGTGATTGCTTTGTGTGAGAACAGTGAACCGAAACATCAGGAAACACATTCCTTTGTATCCAAGAGAAATGCAGGAGATAAACATGATTATGCTTGTCCTGTTTGCGGAGATGGGGGAGAGTTGATCTGCTGTGACAAGTGCCCCTCCACATATCATTTAAACTGTTTGAATTTGGAGAGGCTTCCTGAAGGAAAATGGTTCTGTCCTTATTGTGTATGCAAGCATTGTGGGCTTAGTGATAAAAGCAAGCAACTGATTAAGTGCTTCCAATGTAACAAAAAATTTGACTGGGGATGCTTTAAGGAATTTGAGAAAGAAGCTCTTAAAGATGCCTTAGACATTGACTGTTCGAGATTATACTGTCAGCAAAGTTGTAGAAAGACCCATGAGAAATTGGAGAGTTTAGTTGGAGTCAGGAATGAAGTCGATGAAAGCTACTCTTGGAGAGTTATTCGTCAAATGGAGAAAAGAACATCAACTGTCTCTGAACACCAATATGTTGAAAATAATGCCAAGGTTGCAGTTACATGGAAATTAATGGATGAAGCTTTTGAGACAATAGTTGACAGATATACAGGCCTCAATGTGGTTCGAAGTGTACTATGCAGTCTTCGGTCAAAGTTACCCAGGGTTGATTATAGCCGTTTCTATACGTTTATACTGGAAAAGGATGATGAAATTGTCTCTGCTGCTTCTGTGAGAATCCATGGGCGGAGGCTTGCAGATATGCCCTTTATGGCCACACATAAAAATTATCAAAGAAAAGGATACGGTAGATATCTTCTGGCAGTGGTGGAATCGTTGCTCCGCCATCTTGAAGTGCAAAACTTAATTATTCCCTCCATTCAAGAGCGCGGTAGCATGTGGCGGGAAAAGTTTGGATTTGGTGATCCAAGTTTAGAACTGAGAAGTGAACTAGCGTCATGTAGTATTTTAATGTTTTTTCAGTGTTTAATGCTGTGGAAAGACTTAACATTGTCGCCCGCAAAATCAGTTAGCAATGACCAAAAAGAAGAGAGGCAAATTGGCATTCTGAATGTCGAGGAACCTCGAAATAATCCAATGGACCGTTCCCTTCTAGACCTTAACATATCCCCTCCTGAAGAATGCACAAGGACTGTGGAAGATGATGCGTAG 1140 0.4079 MVIALCENSEPKHQETHSFVSKRNAGDKHDYACPVCGDGGELICCDKCPSTYHLNCLNLERLPEGKWFCPYCVCKHCGLSDKSKQLIKCFQCNKKFDWGCFKEFEKEALKDALDIDCSRLYCQQSCRKTHEKLESLVGVRNEVDESYSWRVIRQMEKRTSTVSEHQYVENNAKVAVTWKLMDEAFETIVDRYTGLNVVRSVLCSLRSKLPRVDYSRFYTFILEKDDEIVSAASVRIHGRRLADMPFMATHKNYQRKGYGRYLLAVVESLLRHLEVQNLIIPSIQERGSMWREKFGFGDPSLELRSELASCSILMFFQCLMLWKDLTLSPAKSVSNDQKEERQIGILNVEEPRNNPMDRSLLDLNISPPEECTRTVEDDA 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5232g00026 379 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 176 319 IPR000182 GO:0016747
Pral5232g00026 379 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 206 296 IPR016181 -
Pral5232g00026 379 PANTHER PHD FINGER PROTEIN 12 6 335 IPR042163 GO:0003714|GO:0045892
Pral5232g00026 379 CDD PHD2_CHD_II 33 72 - -
Pral5232g00026 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 101 IPR013083 -
Pral5232g00026 379 ProSiteProfiles Zinc finger PHD-type profile. 30 75 IPR019787 -
Pral5232g00026 379 Pfam Acetyltransferase (GNAT) family 218 280 IPR000182 GO:0016747
Pral5232g00026 379 Pfam PHD-finger 33 75 IPR019787 -
Pral5232g00026 379 SMART PHD_3 32 73 IPR001965 -
Pral5232g00026 379 Gene3D - 164 306 - -
Pral5232g00026 379 MobiDBLite consensus disorder prediction 338 364 - -
Pral5232g00026 379 SUPERFAMILY FYVE/PHD zinc finger 26 74 IPR011011 -
Pral5232g00026 379 CDD NAT_SF 220 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5232g00026 Pral-Chr5232 203595 207204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5232g00026 32 325 PHD Transcription Factor Family AT1G05380 40.924 5.01e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5232g00026 Acetyltransf_1 6.1e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5232g00026 - - pcin:129311154 575.474