Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5232g00025 ATGGTGATTGCTTTGTGTGAGAACAGTGAACCGAAACATCAGGAAACACATTCCTTTGTATCCAAGAGAAATGCAGGAGATAAACATGATTATGCTTGTCCTGTTTGCGGAGATGGGGGAGAGTTGATCTGCTGTGACAAGTGCCCCTCCACATATCATTTAAACTGTTTGAATTTGGAGAGGCTTCCTGAAGGAAAATGGTTCTGTCCTTATTGTGTATGCAAGCATTGTGGGCTTAGTGATAAAAGCAAGCAACTGATTAAGTGCTTCCAATGTAACAAAAAATTTGACTGGGGATGCTTTAAGGAATTTGAGAAAGAAGCTCTTAAAGATGCCTTAGACATTGACTGTTCGAGATTATACTGTCAGCAAAGTTGTAGAAAGACCCATGAGAAATTGGAGAGTTTAGTTGGAGTCAGGAATGAAGTCGATGAAAGCTACTCTTGGAGAGTTATTCGTCAAATGGAGAAAAGAACATCAACTGTCTCTGAACACCAATATGTTGAAAATAATGCCAAGGTTGCAGTTACATGGAAATTAATGGATGAAGCTTTTGAGACAATAGTTGACAGATATACAGGCCTCAATGTGGTTCGAAGTGTACTATGCAGTCTTCGGTCAAAGTTACCCAGGGTTGATTATAGCCGTTTCTATACGTTTATACTGGAAAAGGATGATGAAATTGTCTCTGCTGCTTCTGTGAGAATCCATGGGCGGAGGCTTGCAGATATGCCCTTTATGGCCACACATAAAAATTATCAAAGAAAAGGATACGGTAGATATCTTCTGGCAGTGGTGGAATCGTGTTTAATGCTGTGGAAAGACTTAACATTGTCGCCCGCAAAATCAGTTAGCAATGACCAAAAAGAAGAGAGGCAAATTGGCATTCTGAATGTCGAGGAACCTCGAAATAATCCAATGGACCGTTCCCTTCTAGACCTTAACATATCCCCTCCTGAAGAATGCACAAGGACTGTGGAAGATGATGCGTAG 993 0.4079 MVIALCENSEPKHQETHSFVSKRNAGDKHDYACPVCGDGGELICCDKCPSTYHLNCLNLERLPEGKWFCPYCVCKHCGLSDKSKQLIKCFQCNKKFDWGCFKEFEKEALKDALDIDCSRLYCQQSCRKTHEKLESLVGVRNEVDESYSWRVIRQMEKRTSTVSEHQYVENNAKVAVTWKLMDEAFETIVDRYTGLNVVRSVLCSLRSKLPRVDYSRFYTFILEKDDEIVSAASVRIHGRRLADMPFMATHKNYQRKGYGRYLLAVVESCLMLWKDLTLSPAKSVSNDQKEERQIGILNVEEPRNNPMDRSLLDLNISPPEECTRTVEDDA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5232g00025 330 CDD NAT_SF 220 267 - -
Pral5232g00025 330 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 210 269 IPR016181 -
Pral5232g00025 330 SUPERFAMILY FYVE/PHD zinc finger 26 74 IPR011011 -
Pral5232g00025 330 SMART PHD_3 32 73 IPR001965 -
Pral5232g00025 330 MobiDBLite consensus disorder prediction 290 330 - -
Pral5232g00025 330 CDD PHD2_CHD_II 33 72 - -
Pral5232g00025 330 Pfam PHD-finger 33 75 IPR019787 -
Pral5232g00025 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 103 IPR013083 -
Pral5232g00025 330 Gene3D - 152 274 - -
Pral5232g00025 330 ProSiteProfiles Zinc finger PHD-type profile. 30 75 IPR019787 -
Pral5232g00025 330 PANTHER PHD FINGER PROTEIN 12 6 272 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5232g00025 Pral-Chr5232 203595 207204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5232g00025 32 270 PHD Transcription Factor Family AT1G05380 41.935 1.50e-61 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5232g00025 PHD 2.6e-08 CL0390