Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5230g00020 ATGTCTCTCTCTGCTTTGTCTTCTCTTCTTCTCACCACCACCTTGCTTTTCATGCAAAATCTGGCAGCCGAAGCTGCGTGTTCCGATTGTTTTATATCTTCTCGAGCTACTTATTACCCGAACTCTGACGAACAAGGAACAGCTGTTGGTGCATGTGGGTTTGGCTCCTTTGGTGCTACAGTCAATGGCGGGGACGTATCCGCAGCTTCTGCTCTTTATCGTGATGGTCTCGGCTGTGGTGCCTGTTACCAGGTGAGGTGTAAGAACAGTGGTTATTGCTCAGACAATGGCGTGACGATAGTGATAACGGACCAAGGTTCAGGTCCTGGCACTGATTTCATTCTGAGCAAACGAGCTTTCACTCATATGGCTCAGACCAGTGATGCTGCTGCGACTTTGTTGGCTTCCGGAGTCGCTGATATTGAATACAGAAGAGTTTCATGCAGCTACCCAGCCAAAAATATCACTTTTAAGATCCATGAGGGTAGCAGCAACCCCAATTACTTGGCCTTCGTCATAGAGTACCAACAAGGCAAAAGAGATATCACTGCTGTGCAGCTCTGTGAGACCAAGAACTTTGCTTGCAAGTTGCTGAGTAGGAGTTTTGGAGCTGTGTGGACTGTGAACTCTCCTCCAAGTGGGCCTTTATCAGTGAGGATGTTGTTTAGTGATGATGATGAAGACACGTGGGTTGTTCCTGTGAATAACATTCCTCAAGACTGGAAGGCTGGAGAAACCTATGATTCTGGAGTTCAAGTGAGCCAGTAG 768 0.474 MSLSALSSLLLTTTLLFMQNLAAEAACSDCFISSRATYYPNSDEQGTAVGACGFGSFGATVNGGDVSAASALYRDGLGCGACYQVRCKNSGYCSDNGVTIVITDQGSGPGTDFILSKRAFTHMAQTSDAAATLLASGVADIEYRRVSCSYPAKNITFKIHEGSSNPNYLAFVIEYQQGKRDITAVQLCETKNFACKLLSRSFGAVWTVNSPPSGPLSVRMLFSDDDEDTWVVPVNNIPQDWKAGETYDSGVQVSQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5230g00020 255 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Pral5230g00020 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Pral5230g00020 255 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Pral5230g00020 255 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Pral5230g00020 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Pral5230g00020 255 Pfam Expansin C-terminal domain 155 233 IPR007117 -
Pral5230g00020 255 Pfam Lytic transglycolase 69 143 IPR009009 -
Pral5230g00020 255 SUPERFAMILY Barwin-like endoglucanases 20 151 IPR036908 -
Pral5230g00020 255 Gene3D - 151 253 IPR036749 -
Pral5230g00020 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Pral5230g00020 255 CDD DPBB_EXLB_N 32 148 - -
Pral5230g00020 255 PANTHER EXPANSIN-B3 16 252 - -
Pral5230g00020 255 Gene3D - 18 149 IPR036908 -
Pral5230g00020 255 SUPERFAMILY PHL pollen allergen 153 249 IPR036749 -
Pral5230g00020 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 249 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5230g00020 Pral-Chr5230 143616 145593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5230g00020 15 254 Expansin Gene Family AT4G17030 43.621 1.55e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5230g00020 - - ccaj:109799868 398.282